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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_0637 and Psyr_0638 are separated by 14 nucleotides
Psyr_0638 and Psyr_0639 are separated by 84 nucleotides
Psyr_0639 and Psyr_0640 are separated by 18 nucleotides
Psyr_0640 and Psyr_0641 are separated by 19 nucleotides
Psyr_0637: Psyr_0637 - LrgB-like protein, at 726,631 to 727,347
_0637
Psyr_0638: Psyr_0638 - Peptidase S16, lon N-terminal, at 727,362 to 727,952
_0638
Psyr_0639: Psyr_0639 - lipoprotein, putative, at 728,037 to 728,603
_0639
Psyr_0640: Psyr_0640 - lipoprotein, putative, at 728,622 to 729,260
_0640
Psyr_0641: Psyr_0641 - smtA protein, at 729,280 to 730,029
_0641
Group
Condition
Psyr
_0637
Psyr
_0638
Psyr
_0639
Psyr
_0640
Psyr
_0641
in planta
apoplastic; Green bean; 13 days
+0.6
-1.5
-0.2
-1.0
-0.5
in planta
epiphytic; Lima bean
-0.1
-0.9
-0.5
-0.2
+0.1
in planta
apoplastic, sonication recovery; Green bean
-0.6
-1.3
-0.2
+0.3
+0.3
in planta
epiphytic; Green bean
-0.6
-0.4
-0.1
-0.4
+0.0
stress
KB with Matrine 10 mM
-0.0
-0.7
-0.5
+0.1
-0.1
stress
KB with Myricetin 10 mM
+0.1
-1.1
-0.0
-0.2
-0.0
carbon source
D-Mannose (C)
+0.7
-0.9
-0.4
-0.4
-0.2
aphid
library passed through aphids in food, 72 hours
-0.4
-0.8
-0.8
+0.6
+0.3
carbon source
Citric Acid (C)
+0.2
-0.4
-0.2
-0.6
-0.0
carbon source
Fumaric (C)
+0.3
-0.3
-0.7
-0.2
-0.1
in planta
apoplastic, sonication recovery; Green bean
+0.1
-0.9
-0.2
+0.2
-0.0
stress
KB with Avocatin A 10 mM
+0.0
+0.5
-0.4
-0.2
-0.4
stress
KB with Sparassol 10 mM
-0.2
-0.7
+0.3
+0.2
-0.1
in planta
apoplastic, chopping recovery; Green bean
+0.3
-1.0
+0.0
-0.1
+0.3
in planta
apoplastic, grinding recovery; Green bean
-0.9
+0.6
-0.6
+0.7
-0.2
stress
KB with Cantharidin 10 mM
+0.0
-0.7
+0.2
+0.3
-0.1
stress
KB with Mexicanolide 10 mM
+0.1
-0.7
-0.1
+0.5
+0.0
carbon source
4-hydroxybutyric (C)
-1.2
+1.1
-0.2
+0.0
+0.3
stress
KB with Fusaric 250 ug/ml
+0.3
-0.7
+0.3
+0.2
+0.1
carbon source
Succinic Acid (C)
+0.2
+0.6
-0.5
-0.1
+0.1
stress
KB with Chloramphenicol 12.5 ug/ml
-0.6
+0.3
+0.1
+0.2
+0.2
in planta
apoplastic; Lima bean
+0.4
+0.3
-0.4
+0.4
-0.4
stress
KB with Ferulic Acid 180 ug/ml
+0.5
-0.3
-0.1
+0.3
+0.3
stress
KB with Carbenicillin 250 ug/ml
-0.3
+0.5
+0.5
+0.2
-0.1
carbon source
Citric Acid (C)
+0.1
+0.3
+0.5
-0.2
+0.3
in planta
epiphytic; Green bean
+0.5
-0.0
+0.6
+0.2
-0.1
aphid
library passed through aphids in food, 72 hours
+0.4
+0.7
-0.1
+0.5
-0.2
aphid
library passed through aphids in food, 72 hours
+0.4
+0.9
-0.2
+0.1
+0.2
in planta
apoplastic; Pepper
+0.2
+0.5
+0.4
+0.3
+0.1
in planta
Green bean; epiphytic
+0.4
+0.6
+0.4
-0.0
+0.3
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