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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_0507 and Psyr_0508 are separated by 83 nucleotides
Psyr_0508 and Psyr_0509 are separated by 296 nucleotides
Psyr_0509 and Psyr_0510 are separated by 32 nucleotides
Psyr_0510 and Psyr_0511 are separated by 26 nucleotides
Psyr_0507: Psyr_0507 - Na+/solute symporter, at 562,015 to 563,574
_0507
Psyr_0508: Psyr_0508 - lyase, putative, at 563,658 to 564,329
_0508
Psyr_0509: Psyr_0509 - PAS:GGDEF, at 564,626 to 566,785
_0509
Psyr_0510: Psyr_0510 - conserved hypothetical protein, at 566,818 to 567,342
_0510
Psyr_0511: Psyr_0511 - conserved hypothetical protein, at 567,369 to 567,665
_0511
Group
Condition
Psyr
_0507
Psyr
_0508
Psyr
_0509
Psyr
_0510
Psyr
_0511
in planta
apoplastic, grinding recovery; Green bean
-0.4
-0.2
+0.0
-1.0
-0.7
in planta
apoplastic; Green bean; 6 days
+0.1
-0.8
+0.1
-0.4
-1.0
in planta
apoplastic; Lima bean
+0.1
-0.6
-0.0
-0.9
-0.1
in planta
apoplastic; Lima bean
+0.1
-0.8
-0.0
-1.0
+0.3
in planta
apoplastic; Green bean; 6 days
+0.1
-0.9
+0.1
-0.1
-0.6
in planta
apoplastic, grinding recovery; Green bean
-0.4
-0.1
+0.2
-0.5
-0.6
in planta
apoplastic; Lima bean
+0.0
-0.8
-0.1
-0.6
+0.2
carbon source
Succinic Acid (C)
-0.0
-0.2
+0.2
-0.4
-0.9
stress
KB with Erythromycin 25 ug/ml
-0.1
+0.2
-0.0
-0.9
-0.5
in planta
apoplastic, sonication recovery; Green bean
+0.1
-1.2
+0.0
-0.3
+0.1
stress
KB with Isovanillin 10 mM
-0.1
-0.1
+0.0
-0.4
-0.7
stress
KB with Benzalkonium Chloride 6.25 ug/ml
+0.2
+0.0
-0.1
-0.6
-0.6
in planta
apoplastic, sonication recovery; Green bean
+0.1
-1.1
+0.2
-0.5
+0.3
stress
KB with Mitomycin C 0.625 ug/ml
+0.1
+0.1
-0.2
-0.7
-0.4
in planta
epiphytic; Green bean
-0.2
+0.0
+0.1
+0.2
-1.0
in planta
apoplastic; Pepper
+0.0
+0.2
-0.3
+0.0
-0.8
in planta
apoplastic; Pepper
+0.1
+0.2
-0.2
-0.7
-0.3
in planta
epiphytic; Green bean
-0.1
+0.2
+0.1
-1.0
+0.0
stress
KB with Berberine 250 ug/ml
+0.1
+0.1
+0.2
+0.0
-0.9
in planta
apoplastic; Lima bean
+0.1
-1.1
+0.2
+0.4
-0.2
in planta
apoplastic, chopping recovery; Green bean
+0.4
-0.9
+0.1
-0.4
+0.3
in planta
apoplastic; Lima bean
+0.0
-0.9
-0.0
-0.3
+0.8
carbon source
Sucrose (C)
+0.2
-0.3
+0.2
+0.4
-0.7
in planta
apoplastic; Lima bean
+0.2
-0.9
+0.1
+0.4
-0.0
stress
KB with Acridine orange 62.5 ug/ml
+0.4
-0.0
-0.0
+0.3
-0.8
in planta
apoplastic; Green bean; 13 days
+0.1
-1.0
+0.1
+0.3
+0.4
aphid
library passed through aphids in food, 72 hours
-0.0
+0.7
-0.6
-0.2
+0.2
kb
KB
-0.1
-0.1
-0.0
-0.4
+0.7
aphid
library passed through aphids in food, 72 hours
+0.1
+0.5
-0.0
-0.4
+0.2
stress
KB with Methanol 5 vol%
+0.1
+0.1
+0.0
+0.7
+0.4
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