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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_0497 and Psyr_0498 are separated by 2 nucleotides
Psyr_0498 and Psyr_0499 are separated by 9 nucleotides
Psyr_0499 and Psyr_0500 overlap by 4 nucleotides
Psyr_0500 and Psyr_0501 are separated by 58 nucleotides
Psyr_0497: Psyr_0497 - LamB/YcsF, at 539,323 to 540,087
_0497
Psyr_0498: Psyr_0498 - Protein of unknown function DUF1445, at 540,090 to 540,884
_0498
Psyr_0499: Psyr_0499 - Urea amidolyase-related protein, at 540,894 to 542,498
_0499
Psyr_0500: Psyr_0500 - biotin carboxyl carrier protein / biotin carboxylase, at 542,495 to 544,228
_0500
Psyr_0501: Psyr_0501 - MscS Mechanosensitive ion channel, at 544,287 to 547,691
_0501
Group
Condition
Psyr
_0497
Psyr
_0498
Psyr
_0499
Psyr
_0500
Psyr
_0501
aphid
library passed through aphids in food, 72 hours
+0.1
-1.5
-0.1
-0.5
-0.0
stress
MBOA 1.2 mM
-1.1
-0.3
-0.2
-0.1
-0.0
stress
KB with Chloramphenicol 12.5 ug/ml
+0.1
-1.1
-0.1
-0.1
-0.1
carbon source
L-Proline (C)
-0.1
-0.5
-0.2
-0.7
+0.2
carbon source
a-Ketoglutaric (C)
-0.3
-0.5
+0.1
-0.4
-0.3
stress
KB with Plumbagin 10 mM
+0.1
-0.6
+0.0
-0.2
-0.5
stress
MBOA 0.5 mM
-0.9
-0.4
+0.0
+0.1
-0.0
stress
MBOA 0.5 mM
-1.5
+0.4
+0.1
-0.0
-0.0
stress
MBOA 2.5 mM
-1.0
+0.3
-0.1
-0.1
-0.0
no stress control
no stress control
-0.9
+0.5
-0.1
-0.2
-0.1
stress
DMSO
-1.0
+0.6
-0.3
+0.0
+0.1
stress
KB with Dimethyl Sulfoxide 1 vol%
+0.5
-0.9
-0.1
+0.1
-0.1
stress
KB with Naringin 250 ug/ml
-0.3
-0.8
+0.1
+0.2
+0.3
stress
MBOA 2.5 mM
-0.9
+0.4
+0.1
+0.2
-0.1
in planta
apoplastic, grinding recovery; Green bean
+0.1
-1.3
+0.3
+0.4
+0.2
aphid
library passed through aphids in food, 72 hours
+0.5
-0.5
-0.1
+0.2
-0.4
no stress control
no stress control
-0.8
+0.4
-0.1
+0.2
+0.2
stress
KB with Diallyl sulfide 10 mM
+0.5
-0.6
-0.2
-0.0
+0.2
carbon source
D-Mannose (C)
+0.2
+0.6
-0.1
-0.5
+0.0
stress
MBOA 1.2 mM
-0.6
+0.8
-0.0
+0.0
+0.0
stress
KB with Fusaric 250 ug/ml
+0.5
-0.6
+0.1
+0.2
+0.1
in planta
apoplastic; Pepper
-0.3
+1.1
-0.3
-0.1
+0.0
stress
KB with Palmatine chloride 10 mM
+0.4
-0.5
+0.1
+0.2
+0.4
in planta
apoplastic; Pepper
+0.6
-0.2
+0.5
+0.2
+0.2
in planta
apoplastic, chopping recovery; Green bean
-0.2
+0.6
+0.3
+0.4
+0.1
stress
KB with Acridine orange 62.5 ug/ml
+0.3
+1.0
+0.0
-0.0
-0.1
in planta
apoplastic; Pepper
+0.4
+0.9
+0.1
-0.1
+0.2
in planta
apoplastic; Pepper
+0.5
+0.2
+0.5
+0.2
+0.1
in planta
apoplastic; Green bean; 13 days
+0.3
+0.7
-0.0
-0.2
+0.7
stress
KB with Mitomycin C 0.625 ug/ml
+0.1
+1.4
-0.0
-0.1
+0.2
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