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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_0239 and Psyr_0240 overlap by 4 nucleotides
Psyr_0240 and Psyr_0241 are separated by 49 nucleotides
Psyr_0241 and Psyr_0242 are separated by 47 nucleotides
Psyr_0242 and Psyr_0243 are separated by 81 nucleotides
Psyr_0239: Psyr_0239 - cytochrome c5, at 252,586 to 252,909
_0239
Psyr_0240: Psyr_0240 - hypothetical protein, at 252,906 to 253,160
_0240
Psyr_0241: Psyr_0241 - conserved hypothetical protein, at 253,210 to 255,141
_0241
Psyr_0242: Psyr_0242 - Protein of unknown function DUF962, at 255,189 to 255,713
_0242
Psyr_0243: Psyr_0243 - cyclic nucleotide-binding protein, at 255,795 to 256,505
_0243
Group
Condition
Psyr
_0239
Psyr
_0240
Psyr
_0241
Psyr
_0242
Psyr
_0243
stress
KB with Nalidixic 12.5 ug/ml
-1.3
-0.2
+0.0
-0.2
+0.2
aphid
library passed through aphids in food, 24 hours
-0.6
-0.1
-0.1
-0.3
-0.1
stress
KB with Berberine 250 ug/ml
-0.6
+0.1
-0.1
-0.4
-0.0
stress
KB with Novobiocin 250 ug/ml
-0.9
+0.0
+0.0
+0.1
-0.4
in planta
apoplastic, grinding recovery; Green bean
-0.5
+0.4
+0.2
-0.5
-0.7
in planta
epiphytic; Green bean
-0.3
+0.3
-0.1
-0.0
-0.6
carbon source
a-Ketoglutaric (C)
-1.0
+0.1
+0.0
+0.3
-0.1
stress
KB with Isoliquiritigenin 10 mM
-0.8
-0.2
-0.0
+0.3
+0.2
kb
KB
-0.6
+0.1
+0.1
+0.3
-0.1
in planta
epiphytic; Lima bean
+0.3
+0.2
-0.1
-0.3
-0.2
stress
KB with Helenine 10 mM
-0.5
-0.1
+0.1
+0.3
+0.2
in planta
epiphytic; Lima bean
-0.1
-0.1
-0.2
-0.3
+0.7
in planta
apoplastic, sonication recovery; Green bean
+0.4
+0.4
+0.0
-0.4
-0.3
in planta
apoplastic; Lima bean
+0.4
-0.5
-0.2
+0.4
+0.0
aphid
library passed through aphids in food, 72 hours
+0.3
+0.6
-0.0
-0.1
-0.5
stress
KB with Dimethyl Sulfoxide 1.25 vol%
-0.4
-0.1
+0.2
+0.4
+0.1
in planta
apoplastic; Lima bean
+0.3
-0.2
-0.2
+0.4
-0.1
stress
KB with Nonanoic 10 mM
+0.2
-0.5
+0.1
+0.2
+0.3
stress
KB with Chrysophanol 10 mM
+0.4
-0.3
+0.1
-0.1
+0.2
stress
KB with Avocatin A 10 mM
+0.3
-0.0
+0.2
+0.4
-0.4
in planta
apoplastic; Lima bean
+0.4
-0.0
+0.1
+0.2
-0.3
carbon source
4-Aminobutyric (C)
+0.4
+0.2
+0.1
-0.3
+0.1
carbon source
Succinic Acid (C)
+0.5
+0.1
+0.1
-0.4
+0.2
stress
KB with Flavone 0.25 mg/ml
-0.5
+0.2
+0.1
+0.4
+0.4
no stress control
no stress control
-0.2
+0.0
+0.1
+0.2
+0.6
carbon source
Glycerol (C)
+0.5
+0.3
+0.1
-0.1
+0.2
stress
KB with Benzalkonium Chloride 6.25 ug/ml
-0.6
+0.5
+0.0
+0.3
+1.0
in planta
apoplastic, chopping recovery; Green bean
+0.1
+0.0
+0.1
+0.8
+0.2
stress
KB with Mitomycin C 0.625 ug/ml
-0.3
+0.4
+0.1
-0.0
+1.3
stress
KB with Acridine orange 62.5 ug/ml
-0.1
+0.8
+0.0
+0.3
+0.8
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