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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_0226 and Psyr_0227 are separated by 233 nucleotides
Psyr_0227 and Psyr_0228 are separated by 242 nucleotides
Psyr_0228 and Psyr_0229 overlap by 4 nucleotides
Psyr_0229 and Psyr_0230 are separated by 72 nucleotides
Psyr_0226: Psyr_0226 - Protein of unknown function DUF861, at 239,693 to 240,061
_0226
Psyr_0227: Psyr_0227 - gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase, at 240,295 to 241,794
_0227
Psyr_0228: Psyr_0228 - Major facilitator superfamily, at 242,037 to 243,185
_0228
Psyr_0229: Psyr_0229 - Phospholipase D/Transphosphatidylase, at 243,182 to 244,762
_0229
Psyr_0230: Psyr_0230 - transcriptional regulator, GntR family, at 244,835 to 246,256
_0230
Group
Condition
Psyr
_0226
Psyr
_0227
Psyr
_0228
Psyr
_0229
Psyr
_0230
carbon source
L-Malic (C)
+0.2
-0.1
-0.4
-0.5
-0.1
stress
KB with Mitomycin C 0.625 ug/ml
-0.4
+0.1
-0.1
-0.1
-0.2
carbon source
4-hydroxybutyric (C)
-0.1
-0.2
-0.4
-0.1
+0.1
in planta
apoplastic; Lima bean
+0.2
-0.2
-0.4
-0.1
+0.0
in planta
apoplastic; Pepper
+0.2
+0.2
-1.1
+0.2
-0.0
no stress control
no stress control
+0.1
+0.2
-0.6
-0.0
-0.0
in planta
apoplastic, chopping recovery; Green bean
-0.7
+0.1
-0.2
+0.1
+0.2
stress
KB with Plumbagin 10 mM
+0.1
-0.1
-0.5
+0.2
-0.1
in planta
epiphytic; Lima bean
-0.1
+0.3
-0.1
-0.3
-0.0
stress
KB with Fusaric 250 ug/ml
-0.5
-0.0
-0.0
+0.2
+0.2
stress
MBOA 1.2 mM
+0.1
+0.2
-0.5
+0.1
+0.0
stress
KB with dihydrojasmonic, methyl ester 10 mM
-0.0
+0.1
-0.5
+0.1
+0.2
stress
MBOA 0.5 mM
+0.2
+0.1
-0.5
+0.0
+0.1
stress
MBOA 1.2 mM
+0.2
+0.2
-0.5
+0.0
+0.0
in planta
apoplastic; Pepper
+0.1
+0.0
-0.6
+0.2
+0.1
stress
MBOA 2.5 mM
+0.3
+0.1
-0.6
-0.0
+0.2
in planta
apoplastic, grinding recovery; Green bean
+0.1
+0.2
+0.2
-0.2
-0.4
stress
MBOA 2.5 mM
+0.3
+0.2
-0.4
-0.0
-0.1
aphid
library passed through aphids in food, 24 hours
-0.3
+0.0
+0.3
-0.1
+0.1
aphid
library passed through aphids in food, 72 hours
-0.0
-0.2
+0.6
-0.2
-0.2
stress
DMSO
+0.2
+0.1
-0.4
+0.1
+0.1
stress
MBOA 2.5 mM
+0.1
+0.2
-0.3
+0.1
+0.1
stress
MBOA 0.5 mM
+0.3
+0.1
-0.4
+0.0
+0.1
stress
KB with Benzalkonium Chloride 6.25 ug/ml
+2.0
+0.2
-1.6
-0.1
-0.3
no stress control
no stress control
+0.3
+0.3
-0.3
+0.1
-0.1
stress
KB with Acriflavine 7.75 ug/ml
+1.1
+1.0
-1.4
-0.2
-0.2
stress
KB with Berberine 250 ug/ml
+0.8
+0.1
-0.4
-0.1
-0.0
in planta
epiphytic; Green bean
+0.1
-0.0
+0.3
+0.3
-0.2
in planta
apoplastic; Pepper
+0.3
-0.1
+0.4
-0.1
+0.2
carbon source
Succinic Acid (C)
+0.0
+0.3
+0.0
+0.2
+0.3
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