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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_0170 and Psyr_0171 are separated by 167 nucleotides
Psyr_0171 and Psyr_0172 are separated by 16 nucleotides
Psyr_0172 and Psyr_0173 overlap by 4 nucleotides
Psyr_0173 and Psyr_0174 are separated by 456 nucleotides
Psyr_0170: Psyr_0170 - heat shock protein Hsp15, at 185,020 to 185,427
_0170
Psyr_0171: Psyr_0171 - EAL, at 185,595 to 186,377
_0171
Psyr_0172: Psyr_0172 - Protein of unknown function DUF785, at 186,394 to 186,870
_0172
Psyr_0173: Psyr_0173 - SSU ribosomal protein S6P modification protein, at 186,867 to 187,772
_0173
Psyr_0174: Psyr_0174 - Sodium:dicarboxylate symporter, at 188,229 to 189,560
_0174
Group
Condition
Psyr
_0170
Psyr
_0171
Psyr
_0172
Psyr
_0173
Psyr
_0174
stress
KB with Levodopa 10 mM
-1.0
+0.0
-0.5
-0.2
-0.4
stress
KB with Huperzine A 10 mM
-0.9
-0.5
-0.0
-0.0
-0.5
stress
KB with Biochanin a diacetate 10 mM
-0.7
-0.0
-0.3
-0.2
-0.6
stress
KB with Terpene 10 mM
-0.5
-0.4
-0.5
-0.1
-0.3
stress
KB with Dihydrodehydroerosone 10 mM
-1.0
-0.0
-0.1
+0.1
-0.7
stress
KB with Dimethyl Sulfoxide 1.25 vol%
-0.9
-0.3
-0.1
+0.1
-0.5
carbon source
4-hydroxybutyric (C)
+0.2
-0.5
-0.3
-1.6
+0.4
aphid
library passed through aphids in food, 72 hours
-1.1
-0.2
+0.3
+0.1
-0.6
stress
KB with Veratric Acid 10 mM
-0.7
-0.2
-0.1
-0.0
-0.5
in planta
apoplastic, sonication recovery; Green bean
-1.8
-0.0
+0.0
+0.5
-0.2
stress
KB with Plumbagin 10 mM
-0.3
-0.3
+0.1
-0.3
-0.7
stress
KB with Chrysin 10 mM
-0.7
-0.0
-0.1
+0.2
-0.7
stress
KB with Harmalol 10 mM
-0.8
+0.2
-0.2
-0.1
-0.3
stress
KB with 2,5-Dihydroxybenzoic Acid 10 mM
-0.5
-0.2
-0.1
+0.2
-0.6
in planta
apoplastic, sonication recovery; Green bean
-1.5
-0.0
-0.2
+0.6
+0.1
in planta
Green bean; epiphytic
-0.3
-0.4
+0.0
-0.6
+0.2
stress
KB with Usnic Acid 10 mM
-0.5
-0.1
-0.2
+0.3
-0.6
stress
KB with Avocatin B 10 mM
+0.1
+0.2
-0.1
-0.1
-1.0
in planta
apoplastic, chopping recovery; Green bean
-0.9
+0.7
-0.4
-0.1
-0.1
stress
KB with Curcumin 10 mM
-1.0
+0.2
-0.1
+0.2
+0.0
no stress control
no stress control
-0.3
-0.6
+0.1
+0.4
-0.2
carbon source
a-Ketoglutaric (C)
-0.8
-0.1
+0.4
-0.0
+0.4
stress
MBOA 2.5 mM
+0.3
-0.2
+0.1
+0.4
-0.6
in planta
apoplastic, grinding recovery; Green bean
-0.3
-0.4
-0.1
+0.3
+0.5
stress
MBOA 2.5 mM
+0.5
-0.3
-0.1
+0.3
-0.4
no stress control
no stress control
+0.6
-0.4
-0.0
+0.4
-0.2
stress
KB with Mitomycin C 0.625 ug/ml
+0.3
-0.1
+0.3
+0.5
-0.6
in planta
apoplastic, grinding recovery; Green bean
-0.6
+0.2
+0.1
+0.7
+0.4
stress
KB with Benzalkonium Chloride 6.25 ug/ml
+0.5
-0.1
+0.4
+0.4
-0.1
stress
KB with Acridine orange 62.5 ug/ml
+0.8
+0.0
+0.3
+0.7
-0.4
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