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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_0167 and Psyr_0168 are separated by 370 nucleotides
Psyr_0168 and Psyr_0169 are separated by 179 nucleotides
Psyr_0169 and Psyr_0170 are separated by 177 nucleotides
Psyr_0170 and Psyr_0171 are separated by 167 nucleotides
Psyr_0167: Psyr_0167 - hypothetical protein, at 181,423 to 181,845
_0167
Psyr_0168: Psyr_0168 - Phosphoenolpyruvate carboxykinase (ATP), at 182,216 to 183,760
_0168
Psyr_0169: Psyr_0169 - Hsp33 protein, at 183,940 to 184,842
_0169
Psyr_0170: Psyr_0170 - heat shock protein Hsp15, at 185,020 to 185,427
_0170
Psyr_0171: Psyr_0171 - EAL, at 185,595 to 186,377
_0171
Group
Condition
Psyr
_0167
Psyr
_0168
Psyr
_0169
Psyr
_0170
Psyr
_0171
aphid
library passed through aphids in food, 72 hours
-5.1
-1.2
-0.3
-1.1
-0.2
aphid
library passed through aphids in food, 72 hours
-4.7
-2.0
+0.2
-0.9
+0.0
in planta
apoplastic, sonication recovery; Green bean
-3.4
-0.3
-0.9
-1.5
-0.0
in planta
apoplastic, sonication recovery; Green bean
-3.6
-0.1
-0.3
-1.8
-0.0
in planta
apoplastic, grinding recovery; Green bean
-3.8
-0.7
+0.3
-0.3
-0.4
in planta
apoplastic; Lima bean
-4.6
-0.6
-0.1
+0.5
+0.3
in planta
apoplastic; Lima bean
-4.2
-0.6
-0.4
+0.4
+0.3
in planta
apoplastic, chopping recovery; Green bean
-3.6
-0.8
+0.1
-0.9
+0.7
in planta
apoplastic; Green bean; 6 days
-3.0
-1.2
+0.5
-0.5
-0.3
aphid
library passed through aphids in food, 72 hours
-1.8
-1.7
-0.4
-0.4
+0.3
carbon source
L-Malic (C)
+0.8
-3.0
-0.8
-0.5
-0.4
in planta
apoplastic; Green bean; 6 days
-1.8
-0.6
-0.2
-0.5
-0.4
in planta
apoplastic; Lima bean
-2.0
-1.2
-0.0
+0.3
-0.4
carbon source
Citric Acid (C)
+0.4
-2.9
-0.1
-0.4
-0.1
in planta
apoplastic; Pepper
-2.9
-0.2
+0.0
+0.2
-0.2
in planta
apoplastic, grinding recovery; Green bean
-1.8
-1.4
+0.6
-0.6
+0.2
carbon source
a-Ketoglutaric (C)
+0.5
-2.4
-0.1
-0.8
-0.1
in planta
epiphytic; Green bean
-2.3
-0.1
-0.1
-0.4
+0.1
in planta
apoplastic; Pepper
-2.6
-0.2
+0.1
+0.1
-0.1
in planta
apoplastic; Lima bean
-1.9
-1.0
+0.2
-0.0
+0.1
carbon source
Succinic Acid (C)
-0.0
-2.2
-0.4
+0.2
-0.2
in planta
apoplastic; Pepper
-2.1
-1.1
+0.4
-0.1
+0.4
in planta
apoplastic; Pepper
-2.1
-0.4
-0.0
+0.4
-0.2
in planta
epiphytic; Green bean
-1.3
-0.5
+0.2
-0.3
-0.4
in planta
apoplastic; Lima bean
-1.5
-1.1
+0.2
+0.2
-0.2
in planta
apoplastic; Lima bean
-1.4
-1.1
-0.0
+0.4
-0.1
carbon source
Fumaric (C)
+0.2
-2.3
-0.1
+0.1
-0.0
in planta
Green bean; epiphytic
-1.5
-0.1
+0.3
-0.3
-0.4
in planta
apoplastic; Pepper
-1.7
-0.8
+0.3
+0.2
+0.3
in planta
apoplastic; Green bean; 13 days
-1.4
-1.0
+0.5
+0.3
+0.3
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