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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_0108 and Psyr_0109 are separated by 414 nucleotides
Psyr_0109 and Psyr_0110 are separated by 363 nucleotides
Psyr_0110 and Psyr_0111 overlap by 1 nucleotides
Psyr_0111 and Psyr_0112 are separated by 16 nucleotides
Psyr_0108: Psyr_0108 - Major facilitator superfamily, at 118,946 to 120,304
_0108
Psyr_0109: Psyr_0109 - hypothetical protein, at 120,719 to 121,144
_0109
Psyr_0110: Psyr_0110 - hypothetical protein, at 121,508 to 122,362
_0110
Psyr_0111: Psyr_0111 - hypothetical protein, at 122,362 to 122,793
_0111
Psyr_0112: Psyr_0112 - hypothetical protein, at 122,810 to 123,193
_0112
Group
Condition
Psyr
_0108
Psyr
_0109
Psyr
_0110
Psyr
_0111
Psyr
_0112
aphid
library passed through aphids in food, 72 hours
-0.1
+0.1
+0.0
-2.9
+0.1
aphid
library passed through aphids in food, 72 hours
-0.3
-0.1
-0.0
-1.5
-0.3
in planta
epiphytic; Lima bean
+0.1
-0.1
+0.0
-1.9
-0.0
in planta
apoplastic; Pepper
+0.0
-0.1
-0.0
-0.7
-0.9
in planta
apoplastic; Pepper
+0.1
-0.1
+0.1
-0.6
-1.0
aphid
library passed through aphids in food, 72 hours
-0.1
-0.1
+0.1
-1.9
+0.4
in planta
apoplastic, chopping recovery; Green bean
-0.6
-0.3
-0.2
-0.3
-0.0
stress
KB with Carnitine (Dl) Hydrochloride 10 mM
-0.2
-0.4
-0.1
-0.2
-0.5
in planta
epiphytic; Lima bean
+0.2
+0.1
+0.1
-1.6
+0.0
stress
DMSO
-0.3
-0.0
-0.1
-0.2
-0.5
in planta
apoplastic; Pepper
-0.3
-0.4
-0.1
-0.6
+0.4
stress
KB with Novobiocin 250 ug/ml
+0.1
-0.3
-0.1
-0.1
-0.5
in planta
apoplastic; Lima bean
-0.3
-0.0
+0.2
-0.4
-0.2
in planta
apoplastic; Pepper
+0.3
-0.1
-0.2
-0.6
-0.1
stress
KB with Resveratrol 10 mM
-0.3
+0.0
-0.2
+0.2
-0.3
in planta
apoplastic; Lima bean
-0.5
-0.0
+0.2
-0.4
+0.0
in planta
apoplastic; Pepper
-0.2
-0.1
-0.2
-0.7
+0.6
stress
KB with Mitomycin C 0.625 ug/ml
+0.0
-0.5
-0.4
+0.4
-0.1
in planta
epiphytic; Green bean
+0.1
+0.2
+0.1
-0.7
+0.1
in planta
apoplastic, grinding recovery; Green bean
+0.0
+0.1
-0.1
-0.5
+0.3
in planta
apoplastic; Green bean; 13 days
-0.6
+0.2
-0.0
+0.4
+0.0
in planta
apoplastic, grinding recovery; Green bean
+0.0
-0.2
-0.0
-0.3
+0.5
in planta
apoplastic, sonication recovery; Green bean
-0.4
+0.4
+0.5
-0.9
+0.5
in planta
epiphytic; Green bean
+0.3
+0.2
+0.1
-0.5
+0.1
in planta
apoplastic, sonication recovery; Green bean
-0.1
+0.7
+0.2
-1.0
+0.4
stress
KB with Benzalkonium Chloride 6.25 ug/ml
+0.3
-0.1
-0.4
+0.5
-0.2
stress
KB with Avocadyne 10 mM
-0.1
+0.2
+0.1
+0.4
-0.3
in planta
epiphytic; Lima bean
+0.5
-0.1
-0.2
+0.0
+0.2
in planta
epiphytic; Green bean
+0.6
+0.1
-0.3
+0.0
-0.0
stress
KB with Acridine orange 62.5 ug/ml
+0.2
-0.1
-0.3
+0.4
+0.3
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