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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_0085 and Psyr_0086 are separated by 200 nucleotides
Psyr_0086 and Psyr_0087 are separated by 152 nucleotides
Psyr_0087 and Psyr_0088 are separated by 120 nucleotides
Psyr_0088 and Psyr_0089 are separated by 750 nucleotides
Psyr_0085: Psyr_0085 - conserved hypothetical protein, at 91,428 to 91,607
_0085
Psyr_0086: Psyr_0086 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s), at 91,808 to 93,727
_0086
Psyr_0087: Psyr_0087 - Fatty acid desaturase, at 93,880 to 95,064
_0087
Psyr_0088: Psyr_0088 - PAS:GGDEF, at 95,185 to 96,192
_0088
Psyr_0089: Psyr_0089 - Response regulator receiver, at 96,943 to 98,331
_0089
Group
Condition
Psyr
_0085
Psyr
_0086
Psyr
_0087
Psyr
_0088
Psyr
_0089
stress
KB with Levodopa 10 mM
-0.7
-0.2
-0.7
-0.2
-0.0
stress
KB with Ginkgolide A 10 mM
-0.3
-0.1
-0.6
-0.2
-0.5
stress
KB with Prenyletin 10 mM
-0.3
-0.3
-0.5
-0.2
-0.2
stress
KB with Hydrastine (1R, 9S) 10 mM
-0.4
-0.2
-0.6
-0.3
+0.1
stress
KB with Emodin 10 mM
-0.6
-0.1
-0.2
-0.3
-0.3
stress
KB with L-alliin 10 mM
-0.9
-0.3
-0.0
-0.1
-0.0
carbon source
L-Proline (C)
-0.3
-0.1
-0.8
-0.2
+0.1
in planta
apoplastic; Green bean; 13 days
-2.1
-0.1
+0.6
+0.2
+0.1
stress
KB with Solanesol 10 mM
-0.5
-0.2
-0.0
-0.4
-0.2
stress
KB with Dimethyl Sulfoxide 1.25 vol%
-0.6
-0.2
+0.1
-0.2
-0.3
carbon source
Glycerol (C)
-1.1
+0.1
-0.3
+0.1
+0.1
in planta
apoplastic; Green bean; 6 days
-0.8
-0.3
+0.6
-0.5
-0.0
aphid
library passed through aphids in food, 72 hours
-0.5
+0.5
-0.1
-0.2
-0.6
in planta
apoplastic; Green bean; 6 days
-0.8
-0.4
+0.8
-0.2
+0.2
stress
KB with Trimethoprim 125 ug/ml
+0.4
+0.1
-0.3
+0.0
-0.5
in planta
apoplastic, grinding recovery; Green bean
-0.2
-0.2
+0.3
-0.3
+0.5
in planta
apoplastic, sonication recovery; Green bean
-0.8
-0.1
-0.0
+0.3
+0.7
stress
KB with Gossypol-Acetic Acid Complex 10 mM
+0.5
-0.1
-0.5
+0.2
+0.1
in planta
apoplastic; Lima bean
+0.7
+0.1
-0.4
-0.2
+0.1
in planta
Green bean; epiphytic
+0.6
+0.1
-0.4
-0.2
+0.2
in planta
epiphytic; Lima bean
+0.9
-0.2
-0.3
-0.0
-0.1
in planta
apoplastic; Lima bean
+0.7
+0.2
-0.2
-0.2
-0.1
in planta
epiphytic; Lima bean
+1.0
-0.0
-0.5
-0.1
+0.2
stress
KB with Fusaric 250 ug/ml
-0.2
+0.1
+0.8
-0.0
-0.2
in planta
apoplastic, sonication recovery; Green bean
-0.7
+0.1
+0.3
+0.3
+0.8
stress
KB with Novobiocin 250 ug/ml
+0.4
+0.1
+0.6
+0.2
-0.1
in planta
epiphytic; Green bean
+1.3
-0.1
+0.2
+0.4
-0.7
aphid
library passed through aphids in food, 24 hours
+0.3
+0.5
+0.3
-0.0
+0.2
in planta
epiphytic; Green bean
+1.2
+0.1
+0.2
+0.2
-0.4
aphid
library passed through aphids in food, 24 hours
+0.4
+0.6
+0.3
-0.0
+0.1
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