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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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500 nt
Pf6N2E2_981 and Pf6N2E2_982 are separated by 111 nucleotides
Pf6N2E2_982 and Pf6N2E2_983 are separated by 2864 nucleotides
Pf6N2E2_983 and Pf6N2E2_984 are separated by 232 nucleotides
Pf6N2E2_984 and Pf6N2E2_985 are separated by 217 nucleotides
Pf6N2E2_981 - Transcriptional regulator in PFGI-1-like cluster, at 1,148,609 to 1,148,839
_981
Pf6N2E2_982 - FIG041388: hypothetical protein in PFGI-1-like cluster, at 1,148,951 to 1,149,124
_982
Pf6N2E2_983 - Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases, at 1,151,989 to 1,152,981
_983
Pf6N2E2_984 - FIG00553873: hypothetical protein, at 1,153,214 to 1,153,591
_984
Pf6N2E2_985 - Multidrug resistance transporter, Bcr/CflA family, at 1,153,809 to 1,154,945
_985
Group
Condition
Pf6N2E2
_981
Pf6N2E2
_982
Pf6N2E2
_983
Pf6N2E2
_984
Pf6N2E2
_985
lb
LB no stress 24 hours
-0.3
N.D.
-0.0
-0.5
-0.1
nitrogen source
nitrogen source nitrite 5mM
-0.3
N.D.
-0.1
-0.3
-0.2
stress
sodium iodide 0.125 M
+0.0
N.D.
+0.1
-0.7
-0.2
nitrogen source
L-Isoleucine (N)
-0.3
N.D.
-0.2
-0.3
+0.1
stress
deoxycholate 0.0125 M
-0.1
N.D.
-0.3
-0.5
+0.1
carbon source
Ying_all64 rep A; time point 3
+0.1
N.D.
-0.1
-0.5
-0.3
stress
bromate 0.05 M
-0.2
N.D.
-0.2
-0.4
+0.1
motility
inner cut, LB soft agar motility assay
+0.3
N.D.
-0.3
-0.2
-0.1
stress
Bile salts 0.0125 M
+0.2
N.D.
+0.2
-0.0
-0.7
nitrogen source
nitrogen source nitrite 1mM
-0.2
N.D.
-0.1
+0.3
-0.2
lb
LB no stress 48 hours
+0.3
N.D.
+0.1
-0.4
-0.1
stress
thiosulfate 0.25 M
+0.2
N.D.
+0.2
-0.4
-0.1
stress
Gjerstad humics 0.5 M
+0.2
N.D.
+0.0
-0.4
+0.1
stress
Nickel (II) chloride 1 mM
+0.5
N.D.
+0.1
-0.3
-0.1
stress
Aluminum chloride 4 mM
+0.2
N.D.
+0.2
-0.3
+0.1
motility
inner cut, LB soft agar motility assay
+0.3
N.D.
+0.3
-0.2
+0.0
vitamin
With vitamins t1
-0.2
N.D.
+0.0
+0.1
+0.5
carbon source
octanoate (C)
+0.6
N.D.
-0.0
+0.1
-0.2
carbon source
Carbon source Sucrose 10 mM
+0.3
N.D.
-0.1
+0.4
-0.1
stress
RCH2 defined with Cobalt chloride 0.04 mM
-0.0
N.D.
+0.2
-0.1
+0.5
carbon source
octanoate (C)
+0.5
N.D.
+0.2
+0.1
-0.3
stress
Chloride 600 mM
-0.2
N.D.
+0.3
+0.4
+0.2
stress
Cobalt chloride 0.4 mM
+0.5
N.D.
+0.1
+0.3
-0.1
stress
Cobalt chloride 0.6 mM
+0.4
N.D.
+0.0
-0.0
+0.5
stress
Nickel (II) chloride 1 mM
+0.5
N.D.
+0.3
+0.3
-0.0
stress
Cobalt chloride 0.4 mM
+0.6
N.D.
+0.2
+0.3
-0.1
nitrogen source
L-Serine (N)
+0.4
N.D.
+0.2
+0.2
+0.6
stress
Cobalt chloride 0.6 mM
+0.5
N.D.
+0.0
+0.1
+1.0
stress
Cobalt chloride 0.6 mM
+0.5
N.D.
-0.0
+0.1
+1.1
stress
Cobalt chloride 0.6 mM
+0.6
N.D.
+0.3
+0.4
+1.0
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