Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E2

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500 ntPf6N2E2_959 and Pf6N2E2_960 are separated by 82 nucleotidesPf6N2E2_960 and Pf6N2E2_961 overlap by 4 nucleotidesPf6N2E2_961 and Pf6N2E2_962 overlap by 4 nucleotidesPf6N2E2_962 and Pf6N2E2_963 are separated by 14 nucleotides Pf6N2E2_959 - putative membrane protein, at 1,130,027 to 1,130,761 _959 Pf6N2E2_960 - Type IV secretory pathway, VirD4 components, at 1,130,844 to 1,132,964 _960 Pf6N2E2_961 - FIG00954712: hypothetical protein, at 1,132,961 to 1,133,476 _961 Pf6N2E2_962 - Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains), at 1,133,473 to 1,133,988 _962 Pf6N2E2_963 - probable exported protein STY4558, at 1,134,003 to 1,134,659 _963
Group Condition Pf6N2E2_959 Pf6N2E2_960 Pf6N2E2_961 Pf6N2E2_962 Pf6N2E2_963
stress DEANONOate 0.000625 M +0.4 -0.0 -1.4 -3.8 +0.5
stress Bile salts 0.0125 M -0.8 -0.0 -1.1 -1.8 +0.2
stress Chloride 0.5 M -0.3 -0.3 -0.4 -2.1 +0.0
stress Cobalt chloride 0.6 mM -0.7 +0.5 -1.3 -1.2 -0.4
stress Hydroxylamine 0.5 M -0.9 +0.3 +0.4 -0.8 -2.0
carbon source Ying_AminoAcid20 rep C; time point 2 -0.5 -0.0 +0.0 -2.0 -0.4
carbon source Ying_Nucleobase14 rep C; time point 2 -0.5 -0.1 -0.1 -2.0 +0.1
motility inner cut, LB soft agar motility assay -0.4 +0.3 -0.3 -0.8 -1.1
carbon source Ying_Others16 rep A; time point 2 -0.4 +0.1 -0.0 -1.8 -0.3
carbon source Ying_Others16 rep C; time point 1 -0.5 -0.1 +0.1 -1.9 +0.1
carbon source Ying_Nucleobase14 rep B; time point 1 -0.4 +0.1 +0.3 -1.9 -0.3
carbon source Ying_OrganicAcid7 rep B; time point 2 -0.3 -0.0 +0.1 -2.0 +0.3
stress Cobalt chloride 0.4 mM -0.7 +0.3 -1.2 -0.2 +0.2
carbon source L-Leucine (C) -0.8 +0.1 -0.4 +0.8 -0.7
stress pyrophosphate 0.0025 M -1.7 -0.0 +0.9 -0.0 -0.1
stress Nickel (II) chloride 1 mM +0.3 +0.0 +0.6 -1.1 -0.7
lb LB no stress 48 hours +0.8 -0.1 -0.5 -1.1 +0.3
stress Cobalt chloride 0.6 mM +0.4 +0.3 +0.4 -0.9 -0.7
stress selenate 0.5 M -0.4 +0.2 +1.1 -0.4 -0.9
motility inner cut, LB soft agar motility assay -1.2 +0.4 -0.8 +1.0 +0.3
carbon source octanoate (C) -0.4 -0.1 -0.7 +1.1 +0.5
stress molybdate 0.25 M -0.7 -0.0 +0.8 +1.1 -0.8
lb LB no stress 24 hours -0.7 -0.0 +1.1 +0.6 -0.3
stress Fluorophosphate 0.125 M -1.0 +0.2 +0.9 +0.6 +0.2
nitrogen source L-Aspartic Acid (N) -0.3 -0.1 +0.6 +1.5 -0.9
stress deoxycholate 0.0125 M -0.4 +0.0 +1.4 +0.5 -0.5
carbon source Ying_AminoAcid20 rep A; time point 3 -0.2 -0.1 +0.1 +1.9 +0.1
stress Cobalt chloride 0.6 mM +1.0 +0.4 +0.3 +0.6 -0.3
stress bromate 0.05 M -0.3 +0.0 +1.1 +1.6 -0.1
vitamin No vitamins t1 +0.4 -0.0 +1.6 +0.8 -0.3
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