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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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500 nt
Pf6N2E2_882 and Pf6N2E2_883 are separated by 31 nucleotides
Pf6N2E2_883 and Pf6N2E2_884 are separated by 95 nucleotides
Pf6N2E2_884 and Pf6N2E2_885 overlap by 4 nucleotides
Pf6N2E2_885 and Pf6N2E2_886 are separated by 401 nucleotides
Pf6N2E2_882 - FIG00961517: hypothetical protein, at 1,031,567 to 1,032,928
_882
Pf6N2E2_883 - Major myo-inositol transporter IolT, at 1,032,960 to 1,034,378
_883
Pf6N2E2_884 - Inosose isomerase (EC 5.3.99.-), at 1,034,474 to 1,035,433
_884
Pf6N2E2_885 - Myo-inositol 2-dehydrogenase (EC 1.1.1.18), at 1,035,430 to 1,036,458
_885
Pf6N2E2_886 - Transcriptional regulator, LacI family, at 1,036,860 to 1,037,825
_886
Group
Condition
Pf6N2E2
_882
Pf6N2E2
_883
Pf6N2E2
_884
Pf6N2E2
_885
Pf6N2E2
_886
carbon source
octanoate (C)
-1.5
-0.1
+0.1
-0.2
-0.1
stress
Hydroxylamine 0.5 M
-0.6
+0.0
-0.3
-0.4
-0.5
lb
LB no stress 48 hours
-0.6
-0.7
-0.1
-0.3
-0.1
stress
dimethyl sulfone 0.25 M
-1.0
-0.0
-0.4
-0.3
+0.1
stress
deoxycholate 0.0125 M
-1.1
-0.5
+0.3
-0.4
+0.2
stress
antimonate 0.005 M
-1.1
-0.6
+0.3
-0.2
-0.1
stress
Chloride 0.5 M
-1.0
-0.3
-0.4
-0.1
+0.2
carbon source
octanoate (C)
-1.3
+0.0
-0.1
-0.2
-0.0
lb
LB no stress 24 hours
-0.7
-0.6
-0.1
-0.0
-0.1
carbon source
RCH2_defined
-1.6
-0.3
+0.3
+0.2
-0.1
stress
Bile salts 0.0125 M
-1.9
+0.4
+0.1
-0.1
+0.0
stress
Nickel (II) chloride 1.5 mM
-1.0
-0.1
-0.6
-0.0
+0.3
stress
perchlorate 0.125 M
-0.4
-0.2
-0.4
-0.4
+0.1
stress
Cobalt chloride 0.4 mM
-1.4
+0.1
-0.2
-0.0
+0.3
stress
selenate 0.5 M
-0.5
-0.4
-0.2
-0.2
+0.1
stress
Cobalt chloride 0.6 mM
-1.2
+0.2
-0.5
+0.3
+0.0
stress
bromate 0.05 M
-0.5
-0.2
-0.4
+0.2
-0.2
carbon source
RCH2_defined
-1.2
-0.0
+0.2
+0.1
+0.2
stress
RCH2 defined with Thallium(I) acetate 0.002 mg/ml
-1.3
-0.0
+0.3
+0.2
+0.1
stress
RCH2 defined with Nickel (II) chloride 0.04 mM
-0.9
-0.3
+0.2
+0.2
+0.1
nitrogen source
Glucuronamide (N)
-1.3
+0.1
+0.4
+0.2
+0.0
resistance
50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
-1.0
+0.1
+0.2
+0.2
+0.1
vitamin
With vitamins t1
-0.7
-0.3
+0.4
-0.2
+0.2
vitamin
With vitamins t2
-0.5
-0.3
+0.4
-0.2
+0.2
stress
RCH2 defined with copper (II) chloride 0.03 mM
-0.9
+0.0
+0.4
+0.3
-0.1
stress
RCH2 defined with Cobalt chloride 0.04 mM
-0.9
+0.0
+0.3
+0.3
+0.2
nitrogen source
nitrogen source Ammonium chloride 20mM
+0.4
+0.5
-0.2
-0.3
+0.1
carbon source
Ying_sugar7 rep B; time point 2
+0.6
+0.6
-0.0
-0.4
+0.0
stress
RCH2 defined with Cobalt chloride 0.04 mM
-0.6
-0.2
+0.7
+0.7
+0.3
carbon source
Ying_sugar7 rep C; time point 2
+0.5
+0.2
+0.2
+0.4
-0.3
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