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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf6N2E2_833 and Pf6N2E2_834 overlap by 4 nucleotides
Pf6N2E2_834 and Pf6N2E2_835 are separated by 56 nucleotides
Pf6N2E2_835 and Pf6N2E2_836 are separated by 231 nucleotides
Pf6N2E2_836 and Pf6N2E2_837 are separated by 7 nucleotides
Pf6N2E2_833 - Probable Co/Zn/Cd efflux system membrane fusion protein, at 972,059 to 973,003
_833
Pf6N2E2_834 - Cation efflux system protein, at 973,000 to 976,080
_834
Pf6N2E2_835 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179), at 976,137 to 977,429
_835
Pf6N2E2_836 - ABC-type protease/lipase transport system, ATPase and permease components, at 977,661 to 979,376
_836
Pf6N2E2_837 - HlyD family secretion protein, at 979,384 to 980,706
_837
Group
Condition
Pf6N2E2
_833
Pf6N2E2
_834
Pf6N2E2
_835
Pf6N2E2
_836
Pf6N2E2
_837
lb
LB no stress 48 hours
-1.0
+0.0
-0.1
-0.4
-0.2
stress
Hydroxylamine 0.5 M
-1.7
-0.2
+0.2
-0.2
+0.2
stress
Vanillyl Alcohol 0.005 M
-0.6
+0.0
-0.5
-0.5
+0.0
carbon source
Carbon source D-Glucose 10 mM
-1.1
-0.2
-0.1
+0.1
-0.3
carbon source
L-Leucine (C)
-0.9
-0.2
+0.1
-0.5
-0.0
stress
molybdate 0.25 M
-0.4
+0.1
-0.3
-0.4
-0.5
carbon source
D-Trehalose (C)
-1.0
-0.3
-0.1
-0.1
+0.0
carbon source
4-Hydroxybenzoic Acid (C)
-1.1
-0.1
+0.0
-0.3
+0.1
nitrogen source
Cytidine (N)
-1.3
-0.1
-0.0
-0.2
+0.2
nitrogen source
L-Lysine (N)
-0.7
+0.0
-0.3
-0.5
+0.1
carbon source
L-Leucine (C)
-1.3
-0.2
-0.0
-0.0
+0.2
stress
Hydrochloric Acid 0.005 M
-0.9
-0.2
-0.2
-0.2
+0.1
nitrogen source
L-Arginine (N)
-1.2
-0.2
-0.1
-0.2
+0.3
carbon source
D-Glucosamine Hydrochloride (C)
-0.8
-0.0
-0.5
-0.1
+0.2
carbon source
Carnitine Hydrochloride (C)
-0.7
+0.2
-0.3
-0.1
-0.3
nitrogen source
Parabanic Acid (N)
-1.0
-0.2
+0.3
-0.2
+0.1
stress
Nickel (II) chloride 1 mM
-0.5
-0.0
-0.4
-0.4
+0.2
stress
Aluminum chloride 0.00005 M
-0.8
-0.1
-0.4
-0.1
+0.2
nitrogen source
Glucuronamide (N)
-0.8
-0.2
-0.3
+0.3
-0.1
stress
thiosulfate 0.25 M
-0.7
-0.0
-0.3
-0.2
+0.3
stress
Chloride 600 mM
-0.0
-0.3
+0.4
-0.7
-0.1
lb
LB no stress 48 hours
-0.6
+0.1
-0.3
-0.2
+0.3
lb
LB no stress 48 hours
-0.9
+0.3
+0.3
-0.3
+0.1
stress
pyrophosphate 0.0025 M
-0.7
-0.2
-0.1
+0.3
+0.3
stress
Phosphomycin 0.004 mg/ml
+0.6
+0.1
-0.8
-0.1
-0.2
carbon source
octanoate (C)
-0.5
-0.2
+0.2
+0.5
-0.2
stress
RCH2 defined with copper (II) chloride 0.03 mM
+0.7
-0.1
+0.1
-0.5
-0.2
nitrogen source
nitrogen source nitrite 1mM
-0.5
-0.3
+0.4
+0.2
+0.1
stress
DEANONOate 0.000625 M
+0.3
+0.1
-0.1
+0.7
-0.4
carbon source
propionate (C)
+0.8
+0.7
-0.0
-0.1
-0.0
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