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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf6N2E2_820 and Pf6N2E2_821 overlap by 4 nucleotides
Pf6N2E2_821 and Pf6N2E2_822 are separated by 341 nucleotides
Pf6N2E2_822 and Pf6N2E2_823 are separated by 297 nucleotides
Pf6N2E2_823 and Pf6N2E2_824 overlap by 4 nucleotides
Pf6N2E2_820 - Sensory box sensor histidine kinase/response regulator (EC 2.7.3.-), at 953,693 to 955,363
_820
Pf6N2E2_821 - KaiC, at 955,360 to 956,862
_821
Pf6N2E2_822 - TPR domain protein, at 957,204 to 958,262
_822
Pf6N2E2_823 - Outer membrane protein OprN, at 958,560 to 959,981
_823
Pf6N2E2_824 - Multidrug efflux transporter MexF, at 959,978 to 963,157
_824
Group
Condition
Pf6N2E2
_820
Pf6N2E2
_821
Pf6N2E2
_822
Pf6N2E2
_823
Pf6N2E2
_824
stress
chromate 0.0000015625 M
-0.4
+0.0
-0.1
-0.8
-1.4
stress
Vancomycin 0.24 mg/ml
+0.0
-0.3
-1.6
+0.0
+0.0
stress
Chloride 600 mM
-1.3
-0.5
+0.3
+0.0
-0.1
stress
Calcium chloride 0.0125 M
-0.5
-0.3
-0.7
-0.0
-0.1
carbon source
Ying_sugar7 rep B; time point 2
+0.1
+0.0
-1.2
-0.3
-0.2
stress
chromate 0.0000015625 M
+0.0
+0.1
-0.1
-0.4
-1.1
stress
periodate 0.00125 M
-0.4
-0.2
-0.7
+0.0
-0.2
stress
DEANONOate 0.000625 M
-0.5
-0.5
-0.1
-0.3
+0.1
nitrogen source
L-Isoleucine (N)
-0.4
+0.1
-0.1
-0.7
-0.2
stress
A22 0.002 mg/ml
-0.4
+0.1
-0.1
-0.5
-0.5
stress
Magnesium chloride 0.125 M
-0.5
+0.2
-0.5
-0.2
+0.1
stress
RCH2 defined with Cobalt chloride 0.02 mM
-0.4
-0.3
+0.4
-0.3
-0.1
nitrogen source
L-Glutamine (N)
+0.1
+0.3
-0.5
-0.4
-0.2
carbon source
D-Fructose (C)
+0.2
+0.3
-0.7
-0.2
-0.2
stress
RCH2 defined with Thallium(I) acetate 0.002 mg/ml
-0.2
-0.3
+0.5
-0.1
-0.4
stress
Hydroxylamine 0.5 M
+0.6
-0.4
-0.1
-0.5
+0.1
nitrogen source
nitrogen source nitrate 20mM
-0.5
-0.3
+0.6
-0.1
-0.0
nitrogen source
L-Serine (N)
-0.1
-0.1
+0.7
-0.6
+0.0
stress
Chlorite 0.00005 M
+0.2
-0.4
-0.1
-0.2
+0.6
stress
Fusidic 0.4 mg/ml
-0.6
-0.0
+0.3
+0.1
+0.6
stress
thiosulfate 0.25 M
-0.3
+0.0
+1.1
-0.4
+0.0
stress
Chloride 0.5 M
+0.6
-0.2
+0.3
-0.5
+0.1
stress
Cobalt chloride 0.6 mM
+0.4
+0.1
+0.5
-0.3
-0.1
stress
molybdate 0.25 M
-0.1
+0.1
+1.1
-0.2
-0.0
nitrogen source
nitrogen source nitrite 1mM
+0.7
+0.2
+0.5
-0.2
-0.1
stress
dimethyl sulfone 0.25 M
-0.7
-0.3
+1.1
+0.1
+1.1
stress
dimethyl sulfone 0.25 M
-0.1
-0.4
+0.8
+0.1
+0.9
stress
molybdate 0.25 M
+0.6
-0.0
+1.4
-0.2
-0.1
stress
thiosulfate 0.25 M
+0.8
-0.0
+1.4
+0.2
+0.1
stress
5-Hydroxymethylfurfural 10 mM
+0.0
-0.2
+0.7
+3.4
+5.0
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