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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf6N2E2_814 and Pf6N2E2_815 overlap by 30 nucleotides
Pf6N2E2_815 and Pf6N2E2_816 overlap by 1 nucleotides
Pf6N2E2_816 and Pf6N2E2_817 overlap by 4 nucleotides
Pf6N2E2_817 and Pf6N2E2_818 are separated by 5 nucleotides
Pf6N2E2_814 - hypothetical protein, at 946,774 to 946,917
_814
Pf6N2E2_815 - Signal transduction histidine kinase, at 946,888 to 950,370
_815
Pf6N2E2_816 - Chemotaxis protein methyltransferase CheR (EC 2.1.1.80), at 950,370 to 951,185
_816
Pf6N2E2_817 - Protein-glutamate methylesterase (EC 3.1.1.61), at 951,182 to 951,769
_817
Pf6N2E2_818 - Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY, at 951,775 to 953,055
_818
Group
Condition
Pf6N2E2
_814
Pf6N2E2
_815
Pf6N2E2
_816
Pf6N2E2
_817
Pf6N2E2
_818
stress
Chloride 600 mM
-0.3
-2.1
-1.8
+0.1
-2.5
stress
deoxycholate 0.0125 M
-1.2
-0.9
-1.1
-0.8
-0.8
nitrogen source
nitrogen source nitrite 0.5mM
-0.9
-0.3
-0.4
-2.1
-1.1
stress
RCH2 defined with Cobalt chloride 0.04 mM
-0.7
-0.2
-0.5
-1.5
-1.6
nitrogen source
nitrogen source nitrite 5mM
-0.7
-0.7
-0.6
-2.1
-0.3
stress
RCH2 defined with Cobalt chloride 0.02 mM
-1.6
-0.6
-0.7
-0.4
-1.0
stress
DEANONOate 0.000625 M
-0.7
-1.7
-1.5
+1.7
-2.0
carbon source
octanoate (C)
-1.3
-0.5
-0.6
-0.4
-0.6
stress
Bile salts 0.0125 M
-0.7
+0.2
-0.9
-1.4
-0.6
carbon source
RCH2_defined
-0.6
-0.5
-1.1
-0.2
-0.9
nitrogen source
nitrogen source nitrite 5mM
+0.1
-0.2
-0.4
-2.0
-0.8
stress
DEANONOate 0.000625 M
-0.6
-1.0
-1.2
+1.3
-1.7
nitrogen source
nitrogen source nitrate 5mM
-0.4
-0.2
-0.6
-2.1
+0.1
nitrogen source
nitrogen source nitrite 1mM
-0.6
-0.2
-0.1
-2.2
+0.0
nitrogen source
nitrogen source nitrite 0.5mM
+0.7
-0.6
-0.5
-1.5
-0.5
nitrogen source
nitrogen source nitrite 1mM
+0.2
-0.2
-0.6
-2.1
+0.5
stress
bromate 0.05 M
-0.3
-0.5
-0.9
+0.6
-1.0
nitrogen source
nitrogen source nitrate 20mM
-1.1
-0.1
+0.1
-1.6
+0.8
stress
perchlorate 50 mM
-0.4
-0.7
-1.0
+1.0
-0.9
carbon source
D-Galactose (C)
+0.5
-0.3
-0.9
+1.2
-0.5
carbon source
Ying_Nucleobase14 rep A; time point 3
+0.1
-0.1
+0.7
+2.1
-0.2
carbon source
Ying_Nucleobase14 rep B; time point 3
+0.2
-0.1
+0.7
+2.1
-0.2
carbon source
Ying_Nucleobase14 rep C; time point 3
-0.2
+0.0
+0.9
+2.3
-0.2
stress
Rifampicin 0.003 mg/ml
+0.4
+0.4
+0.2
+2.5
-0.4
stress
5-Hydroxymethylfurfural 10 mM
+0.5
+0.9
+0.8
+0.5
+1.0
motility
outer cut, LB soft agar motility assay
+0.6
+2.1
+1.6
+1.5
+1.9
motility
inner cut, LB soft agar motility assay
+0.5
+2.2
+1.7
+1.8
+1.8
motility
outer cut, LB soft agar motility assay
+0.7
+2.4
+1.5
+1.6
+2.5
motility
inner cut, LB soft agar motility assay
+1.4
+2.7
+1.9
+1.6
+2.3
motility
inner cut, LB soft agar motility assay
+1.2
+2.8
+2.0
+1.7
+2.6
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