Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E2

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500 ntPf6N2E2_795 and Pf6N2E2_796 are separated by 428 nucleotidesPf6N2E2_796 and Pf6N2E2_797 are separated by 15 nucleotidesPf6N2E2_797 and Pf6N2E2_798 are separated by 32 nucleotidesPf6N2E2_798 and Pf6N2E2_799 overlap by 48 nucleotides Pf6N2E2_795 - ABC transporter ATP-binding protein uup, at 925,389 to 926,954 _795 Pf6N2E2_796 - Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO, at 927,383 to 928,276 _796 Pf6N2E2_797 - ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD, at 928,292 to 930,259 _797 Pf6N2E2_798 - Ku domain protein, at 930,292 to 931,182 _798 Pf6N2E2_799 - hypothetical protein, at 931,135 to 931,344 _799
Group Condition Pf6N2E2_795 Pf6N2E2_796 Pf6N2E2_797 Pf6N2E2_798 Pf6N2E2_799
stress RCH2 defined with Cobalt chloride 0.04 mM -0.4 +0.6 -0.2 -0.2 -1.8
carbon source Ying_Nucleobase14 rep A; time point 3 -0.1 -0.0 +0.1 -0.6 -1.4
carbon source Ying_OrganicAcid7 rep B; time point 3 -0.3 -0.2 -0.1 -0.0 -1.5
carbon source Ying_AminoAcid20 rep A; time point 3 -0.4 -0.1 +0.1 -0.3 -1.4
carbon source Ying_AminoAcid20 rep B; time point 3 -0.6 -0.2 +0.1 +0.1 -1.4
carbon source Ying_OrganicAcid7 rep C; time point 3 -0.2 -0.1 +0.1 -0.2 -1.5
carbon source Ying_AminoAcid20 rep C; time point 3 -0.2 -0.3 -0.0 -0.0 -1.4
stress DEANONOate 0.000625 M -1.2 -0.3 -0.2 -0.1 +0.1
carbon source Ying_all64 rep B; time point 3 -0.3 -0.1 +0.2 -0.1 -1.4
stress RCH2 defined with Nickel (II) chloride 0.04 mM -0.6 +0.4 +0.1 -0.8 -0.8
carbon source Ying_all64 rep C; time point 3 -0.5 -0.1 -0.0 +0.3 -1.4
carbon source Ying_OrganicAcid7 rep A; time point 2 -1.3 +0.1 -0.2 +0.1 -0.4
carbon source Ying_Nucleobase14 rep C; time point 3 +0.2 -0.2 +0.0 -0.2 -1.4
carbon source Ying_OrganicAcid7 rep A; time point 3 -0.2 +0.0 +0.0 +0.3 -1.5
carbon source Ying_AminoAcid20 rep A; time point 2 -1.3 +0.2 +0.0 -0.0 -0.3
motility inner cut, LB soft agar motility assay -0.6 +0.3 -0.0 -0.3 -0.8
stress RCH2 defined with Cobalt chloride 0.04 mM +0.4 +0.4 -0.2 -1.0 -0.8
stress Nickel (II) chloride 1.5 mM -0.3 -0.3 -0.3 -0.6 +0.4
stress Cobalt chloride 0.6 mM -0.6 -0.5 -0.3 +0.1 +0.4
carbon source Ying_Nucleobase14 rep C; time point 2 -1.1 +0.1 +0.4 +0.1 -0.3
stress Hydroxylamine 0.5 M -0.7 +0.4 +0.0 -1.1 +0.5
motility outer cut, LB soft agar motility assay +0.5 -0.3 +0.1 -0.5 -0.5
stress Aluminum chloride 0.00005 M -0.3 +0.3 +0.1 +0.4 -0.9
stress Cobalt chloride 0.4 mM +0.3 -0.5 +0.1 -0.7 +0.6
nitrogen source nitrogen source nitrite 0.5mM -0.6 +0.4 -0.1 -0.7 +0.8
nitrogen source nitrogen source nitrate 20mM -0.9 +0.1 -0.2 +0.4 +0.5
vitamin With vitamins t2 -0.2 -0.3 -0.1 +0.9 -0.4
stress Vanillyl Alcohol 0.005 M -0.9 +0.6 -0.2 +0.1 +0.8
stress RCH2 defined with copper (II) chloride 0.03 mM +0.6 +0.6 -0.1 -0.6 +0.6
stress Fusidic 0.4 mg/ml -0.3 +0.5 +0.1 +0.3 +0.9
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