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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf6N2E2_760 and Pf6N2E2_761 are separated by 95 nucleotides
Pf6N2E2_761 and Pf6N2E2_762 are separated by 183 nucleotides
Pf6N2E2_762 and Pf6N2E2_763 are separated by 341 nucleotides
Pf6N2E2_763 and Pf6N2E2_764 are separated by 68 nucleotides
Pf6N2E2_760 - Na+/H+ antiporter NhaB, at 870,439 to 871,941
_760
Pf6N2E2_761 - Hemolysin-type calcium-binding region, at 872,037 to 873,326
_761
Pf6N2E2_762 - FIG00960186: hypothetical protein, at 873,510 to 873,776
_762
Pf6N2E2_763 - Sigma-54 dependent transcriptional regulator, at 874,118 to 875,443
_763
Pf6N2E2_764 - Fap amyloid fiber secretin, at 875,512 to 876,747
_764
Group
Condition
Pf6N2E2
_760
Pf6N2E2
_761
Pf6N2E2
_762
Pf6N2E2
_763
Pf6N2E2
_764
stress
copper (II) chloride 3 mM
-5.1
-0.1
-0.4
-0.8
+0.2
stress
Gjerstad humics 0.5 M
-4.6
-0.1
-0.2
-0.3
+0.2
nitrogen source
L-Proline (N)
-4.4
-0.0
-0.0
-0.0
+0.2
stress
Cephalothin 4 mg/ml
-4.1
-0.0
-0.1
-0.0
-0.0
stress
Cobalt chloride 0.6 mM
-0.7
-1.1
-1.3
-0.9
-0.0
nitrogen source
Gly-Glu (N)
-4.2
+0.1
+0.0
+0.0
+0.1
stress
Gjerstad humics 0.5 M
-4.0
-0.0
-0.2
+0.4
+0.1
nitrogen source
L-Proline (N)
-4.1
-0.0
+0.1
+0.0
+0.2
stress
Nickel (II) chloride 0.0025 M
-2.7
-0.7
-0.7
+0.0
+0.2
stress
Nickel (II) chloride 1.5 mM
-3.3
-0.2
-0.3
+0.1
-0.1
stress
Hydrochloric Acid 0.005 M
-3.6
-0.2
-0.0
+0.2
+0.0
stress
RCH2 defined with copper (II) chloride 0.03 mM
-2.5
-0.5
-0.0
-0.6
-0.1
stress
RCH2 defined with Cobalt chloride 0.04 mM
-2.5
+0.2
-0.6
-0.4
-0.2
nitrogen source
L-Aspartic Acid (N)
-3.9
-0.2
+0.1
+0.6
+0.0
denitrifying
Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate B
-3.4
-0.1
-0.1
+0.0
+0.1
stress
Nickel (II) chloride 1.5 mM
-3.3
-0.5
+0.1
-0.2
+0.5
nitrogen source
L-Aspartic Acid (N)
-4.1
+0.3
+0.2
+0.1
+0.2
stress
sodium iodate 0.005 M
-3.2
-0.1
-0.4
+0.4
+0.1
stress
Nickel (II) chloride 0.0025 M
-1.9
-0.3
-0.5
-0.7
+0.1
stress
Cobalt chloride 0.6 mM
-0.5
-1.0
-1.4
+0.0
-0.2
denitrifying
Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate A
-3.0
+0.0
-0.3
+0.3
-0.0
stress
Nickel (II) chloride 1.5 mM
-3.2
-0.1
+0.1
+0.2
+0.2
carbon source
Carnitine Hydrochloride (C)
-3.4
+0.0
+0.5
+0.2
+0.1
stress
4-Hydroxyacetophenone 0.00025 M
-2.4
-0.1
-0.3
+0.4
-0.1
nitrogen source
Gly-Glu (N)
-3.3
+0.4
+0.3
-0.0
+0.2
stress
Nickel (II) chloride 1.5 mM
-2.5
+0.0
-0.0
-0.1
+0.5
stress
RCH2 defined with copper (II) chloride 0.03 mM
-2.6
+0.2
-0.0
+0.2
+0.2
stress
RCH2 defined with Nickel (II) chloride 0.04 mM
-2.2
+0.3
+0.4
+0.2
+0.1
nitrogen source
nitrogen source nitrite 5mM
-1.2
+0.2
+1.6
+0.1
+0.0
nitrogen source
nitrogen source nitrite 5mM
-1.1
+0.4
+1.5
+0.2
+0.2
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