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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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500 nt
Pf6N2E2_753 and Pf6N2E2_754 are separated by 57 nucleotides
Pf6N2E2_754 and Pf6N2E2_755 are separated by 24 nucleotides
Pf6N2E2_755 and Pf6N2E2_756 are separated by 373 nucleotides
Pf6N2E2_756 and Pf6N2E2_757 are separated by 274 nucleotides
Pf6N2E2_753 - AFG1-like ATPase, at 862,701 to 863,822
_753
Pf6N2E2_754 - Histone acetyltransferase HPA2 and related acetyltransferases, at 863,880 to 864,374
_754
Pf6N2E2_755 - UPF0141 membrane protein YijP possibly required for phosphoethanolamine modification of lipopolysaccharide, at 864,399 to 866,138
_755
Pf6N2E2_756 - hypothetical protein, at 866,512 to 866,685
_756
Pf6N2E2_757 - 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44), at 866,960 to 867,940
_757
Group
Condition
Pf6N2E2
_753
Pf6N2E2
_754
Pf6N2E2
_755
Pf6N2E2
_756
Pf6N2E2
_757
stress
Aluminum chloride 4 mM
-0.2
-3.7
-1.8
-0.4
+0.2
stress
Zinc chloride 0.0000015625 M
+0.2
-2.2
-2.5
+0.3
-0.8
stress
Aluminum chloride 2 mM
-0.2
-0.6
-2.5
-0.1
-0.2
carbon source
Ying_OrganicAcid7 rep C; time point 3
-0.1
-1.7
-0.1
-1.2
-0.3
carbon source
Ying_Nucleobase14 rep A; time point 3
-0.6
-1.6
-0.1
-0.2
-0.4
stress
tungstate 0.05 M
-0.3
-0.5
-0.3
-1.8
-0.1
carbon source
Ying_Nucleobase14 rep B; time point 3
-0.5
-1.6
+0.1
-0.3
-0.5
stress
bromate 0.05 M
+0.4
-3.0
+0.1
-0.1
+0.1
carbon source
Ying_Nucleobase14 rep C; time point 3
-0.6
-1.6
+0.0
-0.0
-0.4
stress
Aluminum chloride 0.00005 M
-0.1
-1.4
-0.2
-1.0
+0.3
carbon source
Ying_sugar7 rep C; time point 1
-0.0
-0.3
-0.5
-1.3
-0.3
carbon source
D-Galactose (C)
-0.0
-0.3
-1.4
+0.1
-0.4
stress
thiosulfate 0.25 M
-0.5
-0.8
+0.1
-0.7
-0.1
carbon source
Ying_all64 rep C; time point 3
-0.1
-1.7
+0.2
-0.1
-0.1
carbon source
Ying_AminoAcid20 rep B; time point 3
+0.3
-0.9
+0.1
-0.7
-0.5
stress
molybdate 0.25 M
-0.4
+0.3
+0.3
-1.3
-0.6
nitrogen source
Cytosine (N)
-0.0
-1.4
+0.6
-0.1
-0.5
stress
Cobalt chloride 0.6 mM
+0.2
+0.2
-0.2
-1.4
-0.1
nitrogen source
nitrogen source nitrite 1mM
+0.4
-1.4
+0.2
-0.1
-0.3
motility
inner cut, LB soft agar motility assay
-0.5
-1.0
+0.3
-0.1
+0.4
stress
Tetracycline 0.0004 mg/ml
+0.2
-1.4
+0.2
-0.3
+0.5
nitrogen source
nitrogen source nitrate 20mM
+0.3
-1.2
+0.3
+0.4
-0.1
carbon source
Ying_sugar7 rep B; time point 1
+0.1
+0.6
-0.4
-0.7
+0.4
stress
Rifampicin 0.003 mg/ml
+0.2
-1.0
-0.4
+0.4
+1.0
stress
DEANONOate 0.000625 M
+0.6
-0.8
-0.0
+0.5
+0.5
carbon source
Ying_sugar7 rep B; time point 2
-0.0
+1.0
-0.7
+0.1
+0.8
nitrogen source
Cytidine (N)
+0.5
-0.5
+0.7
+0.6
-0.1
stress
Bile salts 0.0125 M
-0.6
+1.7
+0.1
-0.5
+0.8
vitamin
No vitamins t2
-0.1
+1.5
+0.3
-0.0
+0.5
stress
Doxycycline hyclate 0.0001 mg/ml
+0.4
+0.4
+0.3
+1.1
+1.5
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