Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E2

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500 ntPf6N2E2_680 and Pf6N2E2_681 overlap by 4 nucleotidesPf6N2E2_681 and Pf6N2E2_682 are separated by 112 nucleotidesPf6N2E2_682 and Pf6N2E2_683 are separated by 203 nucleotidesPf6N2E2_683 and Pf6N2E2_684 are separated by 137 nucleotides Pf6N2E2_680 - D-amino-acid oxidase (EC 1.4.3.3), at 784,720 to 785,835 _680 Pf6N2E2_681 - 4-hydroxyproline epimerase (EC 5.1.1.8), at 785,832 to 786,764 _681 Pf6N2E2_682 - Predicted regulator PutR for proline utilization, GntR family, at 786,877 to 787,548 _682 Pf6N2E2_683 - Probable MFS transporter, at 787,752 to 788,918 _683 Pf6N2E2_684 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 789,056 to 790,447 _684
Group Condition Pf6N2E2_680 Pf6N2E2_681 Pf6N2E2_682 Pf6N2E2_683 Pf6N2E2_684
nitrogen source Glycine (N) -0.2 -0.1 -1.1 -0.3 -0.1
stress Zinc chloride 0.0000015625 M -1.1 -0.5 -0.5 +0.2 +0.2
nitrogen source L-Phenylalanine (N) +0.2 +0.1 -1.8 -0.1 -0.1
lb LB no stress 48 hours +0.1 -0.7 -0.4 -0.3 -0.3
nitrogen source L-Histidine (N) -0.1 -0.3 -0.9 -0.1 +0.1
nitrogen source L-Phenylalanine (N) +0.1 +0.4 -1.8 -0.1 +0.1
stress Aluminum chloride 0.00005 M -0.8 -0.3 +0.2 -0.0 -0.2
stress Bile salts 0.0125 M -0.6 +0.0 +0.6 -0.4 -0.5
carbon source D-Galactose (C) +0.3 -0.5 -0.5 +0.0 -0.2
resistance 50% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine +0.3 +0.3 -1.7 +0.0 +0.3
stress Cobalt chloride 0.4 mM +0.3 -0.2 -0.7 -0.2 -0.1
resistance 10% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine +0.0 +0.2 -1.0 -0.1 +0.2
nitrogen source L-Proline (N) -0.2 +0.4 -0.4 -0.4 -0.1
carbon source D-Fructose (C) +0.4 -0.4 -0.4 +0.2 -0.3
nitrogen source nitrogen source nitrite 5mM -0.4 +0.3 -0.4 -0.3 +0.3
nitrogen source Parabanic Acid (N) +0.4 +0.2 -0.9 -0.1 -0.1
resistance 20 mM putrescine +0.2 +0.1 -1.2 +0.2 +0.3
nitrogen source Urea (N) +0.3 +0.4 -1.1 +0.1 -0.1
motility inner cut, LB soft agar motility assay -0.7 -0.2 +0.1 +0.3 +0.1
stress sodium iodate 0.005 M -0.6 +0.5 -0.3 +0.1 +0.0
nitrogen source Putrescine (N) +0.3 +0.5 -0.6 -0.2 +0.0
stress Cobalt chloride 0.6 mM +0.6 -0.3 -0.4 -0.0 +0.1
stress thiosulfate 0.25 M -0.6 +0.7 -0.0 -0.2 +0.4
stress deoxycholate 0.0125 M +0.0 +0.7 +0.6 -0.6 +0.1
carbon source L-Leucine (C) +0.3 -0.4 +0.8 +0.2 -0.0
carbon source Ying_OrganicAcid7 rep A; time point 3 -0.1 +0.6 +0.5 -0.1 +0.1
carbon source Ying_sugar7 rep B; time point 2 +0.3 +0.9 +0.1 -0.2 -0.1
carbon source Ying_sugar7 rep C; time point 2 +0.0 +1.3 -0.2 -0.0 +0.0
carbon source L-Leucine (C) -0.2 +0.1 +1.5 -0.2 +0.2
carbon source Glycerol (C) +0.4 -0.1 +1.5 +0.2 -0.2
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