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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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500 nt
Pf6N2E2_6047 and Pf6N2E2_6048 are separated by 56 nucleotides
Pf6N2E2_6048 and Pf6N2E2_6049 are separated by 355 nucleotides
Pf6N2E2_6049 and Pf6N2E2_6050 are separated by 63 nucleotides
Pf6N2E2_6050 and Pf6N2E2_6051 are separated by 125 nucleotides
Pf6N2E2_6047 - hypothetical protein, at 6,867,109 to 6,867,405
_6047
Pf6N2E2_6048 - hypothetical protein, at 6,867,462 to 6,867,776
_6048
Pf6N2E2_6049 - hydrolase, haloacid dehalogenase-like family, at 6,868,132 to 6,868,827
_6049
Pf6N2E2_6050 - Oxidoreductase, short chain dehydrogenase/reductase family, at 6,868,891 to 6,869,637
_6050
Pf6N2E2_6051 - Transcriptional regulator, LysR family, at 6,869,763 to 6,870,686
_6051
Group
Condition
Pf6N2E2
_6047
Pf6N2E2
_6048
Pf6N2E2
_6049
Pf6N2E2
_6050
Pf6N2E2
_6051
stress
Manganese (II) chloride tetrahydrate 0.00078125 M
-2.8
N.D.
-0.4
-0.3
-0.0
nitrogen source
nitrogen source nitrite 0.5mM
-1.3
N.D.
-0.4
-0.4
-0.2
stress
Cobalt chloride 0.6 mM
-1.9
N.D.
+0.1
-0.1
-0.0
carbon source
Ying_Nucleobase14 rep C; time point 1
-0.8
N.D.
-0.6
+0.2
-0.6
stress
Manganese (II) chloride tetrahydrate 0.00078125 M
-1.1
N.D.
-0.2
-0.4
-0.0
carbon source
Ying_Others16 rep A; time point 1
-0.7
N.D.
-0.3
-0.5
-0.2
nitrogen source
nitrogen source Ammonium chloride 20mM
-1.3
N.D.
+0.0
-0.5
+0.1
stress
arsenate 0.0005 M
-1.7
N.D.
+0.0
+0.0
+0.1
nitrogen source
nitrogen source nitrate 5mM
-1.2
N.D.
-0.1
-0.5
+0.4
stress
Fluorophosphate 0.125 M
-1.5
N.D.
-0.3
+0.3
+0.1
carbon source
Carbon source Sucrose 2.5 mM
-1.7
N.D.
+0.0
+0.2
+0.2
stress
sodium carbonate 0.0125 M
-1.1
N.D.
-0.3
+0.5
-0.1
stress
Bile salts 0.0125 M
-1.2
N.D.
-0.2
+0.4
+0.2
carbon source
Trisodium citrate (C)
-1.2
N.D.
+0.4
-0.0
+0.1
denitrifying
Nitrate reduction, replicate C
-1.3
N.D.
+0.2
+0.4
+0.1
nitrogen source
Urea (N)
+0.7
N.D.
-0.4
-0.6
-0.1
stress
phosphite 0.25 M
-0.8
N.D.
+0.4
+0.3
+0.3
stress
Zinc chloride 0.0000015625 M
+1.4
N.D.
-0.1
-0.9
-0.0
nitrogen source
Gly-Glu (N)
+1.4
N.D.
-0.2
-0.5
-0.1
nitrogen source
Cytosine (N)
+1.2
N.D.
-0.3
-0.3
+0.0
lb
LB no stress 24 hours
+1.0
N.D.
+0.3
-0.3
-0.2
carbon source
RCH2_defined
+0.6
N.D.
-0.2
+0.6
+0.4
nitrogen source
nitrogen source nitrite 5mM
+1.3
N.D.
-0.2
+0.2
+0.1
nitrogen source
Cytidine (N)
+1.6
N.D.
-0.2
-0.0
+0.1
nitrogen source
Ammonium chloride (N)
+1.7
N.D.
+0.1
-0.3
+0.0
stress
Hydroxylamine 0.5 M
+1.5
N.D.
-0.4
+0.6
-0.0
stress
Vanillyl Alcohol 0.005 M
+1.4
N.D.
+0.2
+0.3
-0.2
stress
RCH2 defined with Thallium(I) acetate 0.002 mg/ml
+0.7
N.D.
+0.4
+0.8
-0.1
carbon source
casaminos (C)
+1.2
N.D.
+0.1
+0.6
-0.1
carbon source
L-Phenylalanine (C)
+1.3
N.D.
+0.2
+0.4
+0.0
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