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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf6N2E2_6044 and Pf6N2E2_6045 are separated by 156 nucleotides
Pf6N2E2_6045 and Pf6N2E2_6046 are separated by 373 nucleotides
Pf6N2E2_6046 and Pf6N2E2_6047 are separated by 330 nucleotides
Pf6N2E2_6047 and Pf6N2E2_6048 are separated by 56 nucleotides
Pf6N2E2_6044 - Sensor histidine kinase/response regulator, at 6,863,562 to 6,865,652
_6044
Pf6N2E2_6045 - hypothetical protein, at 6,865,809 to 6,865,994
_6045
Pf6N2E2_6046 - hypothetical protein, at 6,866,368 to 6,866,778
_6046
Pf6N2E2_6047 - hypothetical protein, at 6,867,109 to 6,867,405
_6047
Pf6N2E2_6048 - hypothetical protein, at 6,867,462 to 6,867,776
_6048
Group
Condition
Pf6N2E2
_6044
Pf6N2E2
_6045
Pf6N2E2
_6046
Pf6N2E2
_6047
Pf6N2E2
_6048
stress
RCH2 defined with Cobalt chloride 0.04 mM
-0.2
-3.7
-0.8
-0.8
N.D.
stress
Manganese (II) chloride tetrahydrate 0.00078125 M
+0.1
-0.8
-0.5
-2.8
N.D.
carbon source
Trisodium citrate (C)
-0.2
-0.8
-0.5
-1.2
N.D.
stress
Chloride 600 mM
-1.0
-0.8
-0.5
-0.3
N.D.
stress
antimonate 0.005 M
-0.4
-1.1
-1.3
+0.1
N.D.
stress
sodium carbonate 0.0125 M
+0.1
-1.4
+0.1
-1.1
N.D.
nitrogen source
L-Proline (N)
-0.2
-1.4
+0.1
-0.8
N.D.
nitrogen source
Gly-Glu (N)
-0.3
-1.3
-0.7
+0.2
N.D.
stress
DEANONOate 0.000625 M
-0.7
-1.5
+0.4
-0.2
N.D.
stress
Cobalt chloride 0.6 mM
+0.1
-0.6
+0.4
-1.9
N.D.
stress
Fluorophosphate 0.125 M
+0.1
+0.6
-0.9
-1.5
N.D.
carbon source
Carbon source Sucrose 10 mM
-0.3
-1.3
-0.4
+0.4
N.D.
stress
DEANONOate 0.000625 M
-0.7
-1.2
+0.3
+0.2
N.D.
motility
outer cut, LB soft agar motility assay
+0.7
-0.4
-1.6
-0.0
N.D.
carbon source
D-Trehalose (C)
-0.1
-1.6
-0.5
+1.0
N.D.
carbon source
Carbon source Sucrose 2.5 mM
-0.0
+0.3
+0.3
-1.7
N.D.
stress
RCH2 defined with Cobalt chloride 0.04 mM
-0.3
-1.9
+0.6
+0.5
N.D.
nitrogen source
L-Serine (N)
-0.0
-1.6
+0.0
+0.7
N.D.
stress
Hydroxylamine 0.5 M
+0.1
-2.8
+0.8
+1.5
N.D.
carbon source
Ying_AminoAcid20 rep A; time point 2
-0.1
+1.3
-0.7
-0.9
N.D.
nitrogen source
nitrogen source nitrate 20mM
+0.3
+0.9
+0.1
-1.2
N.D.
stress
arsenate 0.0005 M
+0.1
-1.0
+0.6
+0.7
N.D.
carbon source
casaminos (C)
+0.1
-1.1
+0.1
+1.2
N.D.
carbon source
octanoate (C)
-0.2
-1.1
+0.5
+1.3
N.D.
lb
LB no stress 48 hours
-0.1
+1.4
+0.5
-1.0
N.D.
nitrogen source
Cytidine (N)
-0.3
+0.3
-0.6
+1.6
N.D.
stress
Zinc chloride 0.0000015625 M
-0.1
-0.3
+0.5
+1.4
N.D.
nitrogen source
Ammonium chloride (N)
+0.0
+0.3
-0.3
+1.7
N.D.
motility
inner cut, LB soft agar motility assay
+0.5
+1.5
-0.3
+0.3
N.D.
stress
Vanillyl Alcohol 0.005 M
+0.0
+1.1
+0.3
+1.4
N.D.
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