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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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500 nt
Pf6N2E2_6042 and Pf6N2E2_6043 are separated by 723 nucleotides
Pf6N2E2_6043 and Pf6N2E2_6044 are separated by 499 nucleotides
Pf6N2E2_6044 and Pf6N2E2_6045 are separated by 156 nucleotides
Pf6N2E2_6045 and Pf6N2E2_6046 are separated by 373 nucleotides
Pf6N2E2_6042 - hypothetical protein, at 6,861,920 to 6,862,060
_6042
Pf6N2E2_6043 - hypothetical protein, at 6,862,784 to 6,863,062
_6043
Pf6N2E2_6044 - Sensor histidine kinase/response regulator, at 6,863,562 to 6,865,652
_6044
Pf6N2E2_6045 - hypothetical protein, at 6,865,809 to 6,865,994
_6045
Pf6N2E2_6046 - hypothetical protein, at 6,866,368 to 6,866,778
_6046
Group
Condition
Pf6N2E2
_6042
Pf6N2E2
_6043
Pf6N2E2
_6044
Pf6N2E2
_6045
Pf6N2E2
_6046
stress
RCH2 defined with Cobalt chloride 0.04 mM
N.D.
N.D.
-0.2
-3.7
-0.8
stress
antimonate 0.005 M
N.D.
N.D.
-0.4
-1.1
-1.3
stress
Chloride 600 mM
N.D.
N.D.
-1.0
-0.8
-0.5
nitrogen source
Gly-Glu (N)
N.D.
N.D.
-0.3
-1.3
-0.7
carbon source
D-Trehalose (C)
N.D.
N.D.
-0.1
-1.6
-0.5
carbon source
Carbon source Sucrose 10 mM
N.D.
N.D.
-0.3
-1.3
-0.4
stress
Hydroxylamine 0.5 M
N.D.
N.D.
+0.1
-2.8
+0.8
stress
Nickel (II) chloride 1.5 mM
N.D.
N.D.
+0.0
-1.8
-0.1
stress
Aluminum chloride 4 mM
N.D.
N.D.
-0.2
-1.5
-0.2
stress
Nickel (II) chloride 1.5 mM
N.D.
N.D.
-0.1
-1.5
-0.1
stress
Cobalt chloride 0.4 mM
N.D.
N.D.
-0.2
-1.4
-0.2
carbon source
4-Hydroxybenzoic Acid (C)
N.D.
N.D.
-0.2
-0.9
-0.7
stress
DEANONOate 0.000625 M
N.D.
N.D.
-0.7
-1.5
+0.4
vitamin
No vitamins t2
N.D.
N.D.
-0.1
-1.3
-0.4
stress
Nickel (II) chloride 1 mM
N.D.
N.D.
+0.0
-1.7
-0.0
nitrogen source
D-Alanine (N)
N.D.
N.D.
+0.0
-1.0
-0.6
nitrogen source
L-Serine (N)
N.D.
N.D.
-0.0
-1.6
+0.0
stress
RCH2 defined with Cobalt chloride 0.04 mM
N.D.
N.D.
-0.3
-1.9
+0.6
stress
DEANONOate 0.000625 M
N.D.
N.D.
-0.7
-1.2
+0.3
nitrogen source
L-Proline (N)
N.D.
N.D.
-0.2
-1.4
+0.1
motility
outer cut, LB soft agar motility assay
N.D.
N.D.
+0.7
-0.4
-1.6
carbon source
octanoate (C)
N.D.
N.D.
-0.2
-1.1
+0.5
stress
arsenate 0.0005 M
N.D.
N.D.
+0.1
-1.0
+0.6
stress
Fluorophosphate 0.125 M
N.D.
N.D.
+0.1
+0.6
-0.9
carbon source
D-Trehalose (C)
N.D.
N.D.
-0.2
+0.8
-0.6
carbon source
Ying_AminoAcid20 rep A; time point 2
N.D.
N.D.
-0.1
+1.3
-0.7
stress
Aluminum chloride 0.00005 M
N.D.
N.D.
+0.1
+1.3
-0.5
motility
inner cut, LB soft agar motility assay
N.D.
N.D.
+0.5
+1.5
-0.3
lb
LB no stress 48 hours
N.D.
N.D.
-0.1
+1.4
+0.5
lb
LB no stress 48 hours
N.D.
N.D.
+0.1
+1.7
+0.4
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