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Gene
Fitness
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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500 nt
Pf6N2E2_5994 and Pf6N2E2_5995 are separated by 389 nucleotides
Pf6N2E2_5995 and Pf6N2E2_5996 are separated by 9 nucleotides
Pf6N2E2_5996 and Pf6N2E2_5997 overlap by 4 nucleotides
Pf6N2E2_5997 and Pf6N2E2_5998 are separated by 128 nucleotides
Pf6N2E2_5994 - Superfamily II DNA/RNA helicases, SNF2 family, at 6,810,094 to 6,810,435
_5994
Pf6N2E2_5995 - Protein containing domains DUF404, DUF407, at 6,810,825 to 6,812,234
_5995
Pf6N2E2_5996 - Protein containing domains DUF403, at 6,812,244 to 6,813,194
_5996
Pf6N2E2_5997 - Protein containing transglutaminase-like domain, putative cysteine protease, at 6,813,191 to 6,813,994
_5997
Pf6N2E2_5998 - Cytochrome c family protein, at 6,814,123 to 6,814,935
_5998
Group
Condition
Pf6N2E2
_5994
Pf6N2E2
_5995
Pf6N2E2
_5996
Pf6N2E2
_5997
Pf6N2E2
_5998
stress
periodate 0.00125 M
-0.7
+0.1
-0.1
-0.3
-0.2
stress
RCH2 defined with Cobalt chloride 0.04 mM
-1.3
+0.1
+0.0
+0.1
-0.1
stress
Cobalt chloride 0.4 mM
-0.6
+0.1
-0.1
-0.2
-0.2
stress
copper (II) chloride 3 mM
-0.5
+0.1
-0.1
-0.3
-0.1
nitrogen source
L-Serine (N)
-0.4
-0.1
-0.3
-0.3
+0.2
carbon source
D-Alanine (C)
-0.8
+0.0
+0.0
-0.2
+0.1
lb
LB no stress 48 hours
-0.3
+0.1
-0.2
-0.4
-0.0
motility
inner cut, LB soft agar motility assay
-0.6
-0.3
+0.0
-0.1
+0.1
stress
RCH2 defined with Cobalt chloride 0.04 mM
-0.6
+0.1
+0.3
-0.2
-0.3
stress
Cobalt chloride 0.6 mM
-0.7
+0.1
-0.1
+0.1
-0.2
carbon source
Carbon source Sucrose 5 mM
-0.4
-0.1
+0.2
-0.3
-0.2
carbon source
D-Galactose (C)
-0.6
+0.1
+0.1
-0.4
+0.1
stress
Vancomycin 0.24 mg/ml
-0.1
-0.2
-0.1
-0.4
+0.2
carbon source
L-Arabinose (C)
-0.7
-0.1
-0.1
-0.0
+0.3
carbon source
D-Glucosamine Hydrochloride (C)
-0.9
+0.1
+0.0
+0.0
+0.1
stress
Cobalt chloride 0.4 mM
-0.6
+0.2
-0.1
-0.1
-0.1
stress
Hydroxylamine 0.5 M
-0.2
+0.1
+0.2
-0.2
-0.3
carbon source
Ying_Others16 rep C; time point 3
-0.4
-0.2
+0.1
-0.0
+0.2
carbon source
D-Mannose (C)
-0.2
-0.1
-0.2
-0.3
+0.3
carbon source
D-Xylose (C)
-0.5
+0.2
+0.2
-0.3
+0.1
stress
Zinc chloride 0.0000015625 M
+0.2
+0.2
-0.3
-0.4
+0.0
carbon source
octanoate (C)
-0.6
+0.2
-0.3
+0.1
+0.5
stress
Cobalt chloride 0.6 mM
-0.5
+0.1
-0.1
+0.1
+0.2
nitrogen source
Glucuronamide (N)
+0.2
+0.2
+0.4
-0.1
-0.5
nitrogen source
nitrogen source nitrate 5mM
-0.4
+0.2
+0.2
+0.0
+0.2
stress
thiosulfate 0.25 M
+0.9
-0.1
-0.1
-0.2
-0.0
stress
Chloride 600 mM
+0.3
+0.1
-0.3
+0.2
+0.1
vitamin
With vitamins t1
-0.2
-0.1
+0.2
+0.4
+0.2
stress
Nickel (II) chloride 0.0025 M
+0.4
-0.0
+0.3
-0.2
+0.1
vitamin
No vitamins t1
+0.0
-0.1
+0.4
+0.4
+0.1
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