Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E2

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500 ntPf6N2E2_5977 and Pf6N2E2_5978 are separated by 190 nucleotidesPf6N2E2_5978 and Pf6N2E2_5979 are separated by 58 nucleotidesPf6N2E2_5979 and Pf6N2E2_5980 are separated by 6 nucleotidesPf6N2E2_5980 and Pf6N2E2_5981 are separated by 185 nucleotides Pf6N2E2_5977 - Galactonate dehydratase (EC 4.2.1.6), at 6,794,323 to 6,795,471 _5977 Pf6N2E2_5978 - Hexuronate transporter, at 6,795,662 to 6,796,972 _5978 Pf6N2E2_5979 - D-galactonate regulator, IclR family, at 6,797,031 to 6,797,834 _5979 Pf6N2E2_5980 - Alcohol dehydrogenase (EC 1.1.1.1), at 6,797,841 to 6,798,893 _5980 Pf6N2E2_5981 - Transcriptional regulator, AraC family, at 6,799,079 to 6,799,969 _5981
Group Condition Pf6N2E2_5977 Pf6N2E2_5978 Pf6N2E2_5979 Pf6N2E2_5980 Pf6N2E2_5981
carbon source D-Galactose (C) -3.0 -3.3 -0.1 +0.1 +0.1
carbon source D-Galactose (C) -2.5 -2.8 -0.2 -0.2 +0.2
stress Zinc chloride 0.0000015625 M -0.0 -0.7 -1.3 +0.3 -0.1
carbon source Ying_Nucleobase14 rep B; time point 3 -0.0 +0.1 -1.8 -0.1 +0.2
carbon source Ying_Nucleobase14 rep C; time point 3 -0.4 +0.1 -1.2 -0.0 -0.0
nitrogen source nitrogen source nitrite 5mM -0.0 -0.1 -0.7 -0.3 -0.4
nitrogen source L-Serine (N) -0.1 -0.6 -0.6 -0.0 -0.2
motility outer cut, LB soft agar motility assay -0.2 +0.0 -1.2 -0.2 +0.2
carbon source Ying_Nucleobase14 rep C; time point 2 -0.2 -0.1 -0.9 -0.2 +0.1
stress Magnesium chloride 0.125 M +0.2 +0.0 -1.2 -0.1 -0.3
nitrogen source nitrogen source nitrite 1mM +0.2 -0.3 -0.4 -0.2 -0.5
vitamin With vitamins t2 -0.1 +0.0 -0.4 +0.2 -0.8
nitrogen source nitrogen source nitrite 5mM -0.0 +0.3 -0.9 -0.0 -0.2
carbon source Ying_Nucleobase14 rep A; time point 3 -0.1 +0.1 -1.3 +0.1 +0.2
motility inner cut, LB soft agar motility assay +0.2 +0.3 -1.3 -0.3 +0.2
nitrogen source L-Serine (N) -0.2 +0.4 -1.0 +0.0 -0.0
motility inner cut, LB soft agar motility assay -0.0 +0.5 -1.0 +0.4 -0.3
carbon source D-Fructose (C) +0.2 +0.2 -0.9 +0.2 +0.2
stress Nickel (II) chloride 0.0025 M +0.5 +0.1 -0.5 +0.1 -0.3
stress Bile salts 0.0125 M +0.4 +0.6 -0.1 -0.4 -0.4
nitrogen source Gly-Glu (N) +0.5 -0.1 -0.3 +0.4 -0.4
lb LB no stress 48 hours +0.2 -0.0 -0.6 +0.4 +0.4
stress RCH2 defined with Nickel (II) chloride 0.04 mM -0.5 +0.1 +0.2 +0.4 +0.2
stress periodate 0.00125 M +0.2 +0.3 -0.2 -0.3 +0.5
carbon source D-Xylose (C) -0.2 -0.1 +1.2 +0.2 -0.2
stress RCH2 defined with Cobalt chloride 0.04 mM -0.3 +0.5 +0.5 -0.2 +0.6
stress Aluminum chloride 4 mM -0.1 -0.1 +0.5 +0.6 +0.4
stress deoxycholate 0.0125 M +0.4 +0.5 +0.3 +0.3 +0.2
carbon source m-Inositol (C) +0.2 -0.0 +1.3 +0.1 +0.2
carbon source D-Xylose (C) -0.1 -0.1 +1.7 +0.5 +0.4
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