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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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500 nt
Pf6N2E2_5968 and Pf6N2E2_5969 are separated by 75 nucleotides
Pf6N2E2_5969 and Pf6N2E2_5970 are separated by 10 nucleotides
Pf6N2E2_5970 and Pf6N2E2_5971 are separated by 153 nucleotides
Pf6N2E2_5971 and Pf6N2E2_5972 are separated by 32 nucleotides
Pf6N2E2_5968 - ABC transporter for D-galactose/L-arabinose, substrate-binding component
(from data)
, at 6,786,641 to 6,787,645
_5968
Pf6N2E2_5969 - ABC transporter for D-galactose/L-arabinose, ATPase component
(from data)
, at 6,787,721 to 6,789,265
_5969
Pf6N2E2_5970 - ABC transporter for D-galactose/L-arabinose, permease component
(from data)
, at 6,789,276 to 6,790,244
_5970
Pf6N2E2_5971 - ParE toxin protein, at 6,790,398 to 6,790,778
_5971
Pf6N2E2_5972 - hypothetical protein, at 6,790,811 to 6,791,155
_5972
Group
Condition
Pf6N2E2
_5968
Pf6N2E2
_5969
Pf6N2E2
_5970
Pf6N2E2
_5971
Pf6N2E2
_5972
carbon source
L-Arabinose (C)
-2.3
-2.3
-2.3
-0.0
-0.2
carbon source
L-Arabinose (C)
-2.0
-2.2
-2.1
-0.3
-0.3
carbon source
D-Galactose (C)
-2.0
-1.7
-2.4
+0.3
-0.5
carbon source
D-Galactose (C)
-1.3
-1.6
-1.4
+0.2
-0.2
carbon source
L-Leucine (C)
-0.4
+0.0
-0.2
+0.2
-2.1
nitrogen source
L-Aspartic Acid (N)
-0.1
-0.1
-0.2
-0.1
-1.9
nitrogen source
L-Serine (N)
+0.3
+0.2
-0.0
-0.3
-2.0
carbon source
Carbon source D,L-Lactate 10 mM
-0.1
-0.0
-0.0
-0.2
-1.5
stress
Zinc chloride 0.0000015625 M
+0.0
+0.0
+0.2
+0.0
-2.0
carbon source
D-Mannose (C)
-0.2
-0.4
-0.3
-0.1
-0.7
nitrogen source
L-Arginine (N)
-0.2
+0.1
-0.0
-0.0
-1.4
stress
DEANONOate 0.000625 M
-0.0
+0.0
-0.3
-0.1
-1.1
stress
pyrophosphate 0.0025 M
-0.1
-0.0
+0.1
-0.0
-1.4
lb
LB no stress 24 hours
+0.0
-0.1
-0.1
-0.4
-0.8
nitrogen source
L-Histidine (N)
-0.3
+0.0
-0.2
+0.2
-0.9
nitrogen source
L-Asparagine (N)
+0.0
+0.1
-0.2
-0.2
-1.0
stress
Hydroxylamine 0.5 M
+0.0
+0.3
-0.0
+0.2
-1.6
stress
Bile salts 0.0125 M
-0.5
+0.1
+0.6
-0.4
-0.7
stress
dimethyl sulfone 0.25 M
-0.0
+0.1
+0.2
-0.4
-0.9
nitrogen source
L-Serine (N)
-0.1
+0.2
+0.5
-0.6
-1.0
carbon source
Carbon source Sucrose 10 mM
+0.1
+0.1
+0.2
-0.0
-1.2
carbon source
D-Mannose (C)
-0.4
-0.6
-0.6
+0.2
+0.5
lb
LB no stress 48 hours
+0.0
-0.0
-0.2
+0.6
-1.0
carbon source
D-Trehalose (C)
-0.0
+0.2
-0.0
+0.4
-1.1
stress
RCH2 defined with copper (II) chloride 0.03 mM
+0.1
+0.0
-0.1
-0.7
+0.5
nitrogen source
nitrogen source nitrite 1mM
+0.1
-0.1
-0.2
-0.6
+0.6
nitrogen source
nitrogen source nitrate 5mM
-0.1
+0.0
+0.1
-0.7
+0.7
stress
sodium fluoride 15 mM
-0.1
+0.0
-0.2
-0.3
+0.9
nitrogen source
nitrogen source nitrate 20mM
-0.0
-0.0
-0.1
-0.4
+1.6
nitrogen source
nitrogen source Ammonium chloride 20mM
+0.1
+0.1
-0.1
+0.1
+1.3
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Pf6N2E2_5970
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