Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E2

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500 ntPf6N2E2_5939 and Pf6N2E2_5940 overlap by 1 nucleotidesPf6N2E2_5940 and Pf6N2E2_5941 are separated by 20 nucleotidesPf6N2E2_5941 and Pf6N2E2_5942 are separated by 226 nucleotidesPf6N2E2_5942 and Pf6N2E2_5943 overlap by 21 nucleotides Pf6N2E2_5939 - Isoquinoline 1-oxidoreductase beta subunit (EC 1.3.99.16), at 6,757,608 to 6,759,923 _5939 Pf6N2E2_5940 - Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family, at 6,759,923 to 6,760,894 _5940 Pf6N2E2_5941 - CTP:molybdopterin cytidylyltransferase, at 6,760,915 to 6,761,505 _5941 Pf6N2E2_5942 - Ribonuclease E (EC 3.1.26.12), at 6,761,732 to 6,764,929 _5942 Pf6N2E2_5943 - hypothetical protein, at 6,764,909 to 6,765,313 _5943
Group Condition Pf6N2E2_5939 Pf6N2E2_5940 Pf6N2E2_5941 Pf6N2E2_5942 Pf6N2E2_5943
carbon source D-Fructose (C) +0.1 +0.2 +0.1 N.D. -4.3
stress copper (II) chloride 3 mM -0.2 +0.2 -0.2 N.D. -2.9
stress DEANONOate 0.000625 M -0.1 -0.2 -0.1 N.D. -2.2
stress Nickel (II) chloride 0.0025 M +0.1 -0.0 +0.1 N.D. -2.7
carbon source Ying_OrganicAcid7 rep A; time point 3 +0.1 -0.1 -0.3 N.D. -2.4
carbon source D-Mannose (C) -0.0 -0.0 -0.0 N.D. -2.5
stress deoxycholate 0.0125 M +0.3 +0.4 +0.3 N.D. -3.3
stress Zinc chloride 0.0000015625 M -0.2 +0.2 +0.1 N.D. -2.4
carbon source D-Xylose (C) -0.0 -0.2 -0.4 N.D. -1.5
lb LB no stress 48 hours -0.0 +0.2 -0.0 N.D. -2.1
carbon source Putrescine (C) +0.1 +0.0 -0.0 N.D. -2.1
carbon source Ying_OrganicAcid7 rep B; time point 3 +0.1 -0.2 -0.3 N.D. -1.6
nitrogen source L-Phenylalanine (N) -0.0 +0.1 +0.2 N.D. -1.9
nitrogen source Ammonium chloride (N) -0.1 -0.2 +0.2 N.D. -1.7
carbon source D-Glucosamine Hydrochloride (C) +0.1 +0.0 +0.1 N.D. -1.8
nitrogen source L-Glutamine (N) -0.1 -0.1 +0.4 N.D. -1.7
carbon source D-Galactose (C) -0.1 +0.3 -0.3 N.D. -1.4
carbon source D-Galactose (C) +0.1 +0.3 -0.2 N.D. -1.6
nitrogen source nitrogen source nitrite 1mM -0.1 -0.2 +0.4 N.D. -1.3
carbon source Carbon source D-Glucose 10 mM +0.1 +0.1 +0.4 N.D. -1.4
carbon source Tween 20 (C) +0.3 +0.3 +0.7 N.D. -1.2
stress tungstate 0.05 M -0.3 -0.1 -0.1 N.D. +1.6
stress dimethyl sulfone 0.25 M -0.2 +0.1 -0.4 N.D. +1.6
carbon source Tween 20 (C) +0.6 +0.4 +1.4 N.D. -0.6
stress Sisomicin 0.0016 mg/ml -0.1 +0.2 +0.1 N.D. +1.7
stress Vancomycin 0.24 mg/ml +0.1 +0.0 +0.7 N.D. +1.2
stress Doxycycline hyclate 0.0001 mg/ml +0.0 +0.0 +0.3 N.D. +1.7
stress Spectinomycin 0.01 mg/ml +0.0 +0.1 +0.2 N.D. +1.8
motility outer cut, LB soft agar motility assay -0.2 -0.1 +0.3 N.D. +2.2
stress Rifampicin 0.003 mg/ml +0.0 +0.0 -0.3 N.D. +2.9
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Pf6N2E2_5939
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Pf6N2E2_5940
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