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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf6N2E2_5927 and Pf6N2E2_5928 overlap by 4 nucleotides
Pf6N2E2_5928 and Pf6N2E2_5929 are separated by 294 nucleotides
Pf6N2E2_5929 and Pf6N2E2_5930 are separated by 279 nucleotides
Pf6N2E2_5930 and Pf6N2E2_5931 are separated by 95 nucleotides
Pf6N2E2_5927 - ABC-type multidrug transport system, ATPase component, at 6,747,342 to 6,748,274
_5927
Pf6N2E2_5928 - ABC-type multidrug transport system, permease component, at 6,748,271 to 6,749,056
_5928
Pf6N2E2_5929 - FIG00954461: hypothetical protein, at 6,749,351 to 6,749,731
_5929
Pf6N2E2_5930 - Predicted hydrolase of the metallo-beta-lactamase superfamily, clustered with KDO2-Lipid A biosynthesis genes, at 6,750,011 to 6,752,257
_5930
Pf6N2E2_5931 - MotA/TolQ/ExbB proton channel family protein, at 6,752,353 to 6,752,988
_5931
Group
Condition
Pf6N2E2
_5927
Pf6N2E2
_5928
Pf6N2E2
_5929
Pf6N2E2
_5930
Pf6N2E2
_5931
stress
antimonate 0.005 M
-3.8
-4.6
-0.6
-0.4
N.D.
stress
antimonate 0.005 M
-2.9
-5.0
-0.8
-0.2
N.D.
stress
Choline Lysine 20 mM
-0.2
-0.3
-4.8
-0.0
N.D.
stress
Zinc chloride 0.0000015625 M
-1.6
-1.8
-0.6
-0.6
N.D.
stress
arsenate 0.0005 M
-1.4
-2.0
-0.4
-0.1
N.D.
stress
sodium carbonate 0.0125 M
-0.2
+0.1
-2.4
-0.0
N.D.
stress
5-Hydroxymethylfurfural 10 mM
-1.1
-1.6
+0.2
+0.1
N.D.
stress
L-Lysine 25 mM
+0.0
-0.2
-2.2
-0.1
N.D.
stress
DEANONOate 0.000625 M
-1.1
-1.2
-0.1
+0.2
N.D.
stress
arsenate 0.0005 M
-1.3
-0.7
+0.1
-0.3
N.D.
stress
Hydroxide 0.05 M
+0.0
+0.0
-2.1
-0.1
N.D.
stress
sodium carbonate 0.0125 M
-0.0
-0.0
-2.2
+0.1
N.D.
motility
inner cut, LB soft agar motility assay
-1.1
-0.5
-0.2
-0.3
N.D.
stress
deoxycholate 0.0125 M
-0.2
-0.5
-1.4
+0.1
N.D.
stress
Hydroxide 0.05 M
-0.0
+0.1
-1.6
-0.3
N.D.
stress
RCH2 defined with Cobalt chloride 0.04 mM
-0.7
-0.2
-0.8
-0.1
N.D.
stress
Nickel (II) chloride 1.5 mM
-1.4
-0.5
-0.1
+0.3
N.D.
stress
Cobalt chloride 0.6 mM
-0.5
-0.5
-0.5
-0.2
N.D.
stress
Nickel (II) chloride 0.0025 M
-0.8
-0.6
-0.2
-0.0
N.D.
stress
Cobalt chloride 0.6 mM
-0.7
-0.8
-0.1
+0.1
N.D.
stress
Cobalt chloride 0.6 mM
-0.7
-0.8
-0.3
+0.4
N.D.
stress
Nickel (II) chloride 1.5 mM
-0.8
-0.5
-0.3
+0.4
N.D.
stress
Cobalt chloride 0.6 mM
-0.7
-0.5
-0.1
+0.3
N.D.
stress
Nickel (II) chloride 1.5 mM
-0.8
-0.4
-0.1
+0.3
N.D.
stress
A22 0.002 mg/ml
+0.6
+0.7
-0.2
-0.1
N.D.
carbon source
D-Galactose (C)
+0.2
-0.1
+0.9
+0.2
N.D.
stress
Chloramphenicol 0.002 mg/ml
+0.8
+0.7
-0.1
+0.1
N.D.
carbon source
D-Fructose (C)
-0.1
+0.1
+1.1
+0.5
N.D.
stress
Nalidixic 0.004 mg/ml
+1.1
+0.4
+0.2
+0.3
N.D.
stress
Chloramphenicol 0.008 mg/ml
+1.7
+1.6
+0.3
-0.2
N.D.
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