Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E2

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500 ntPf6N2E2_5879 and Pf6N2E2_5880 overlap by 4 nucleotidesPf6N2E2_5880 and Pf6N2E2_5881 are separated by 129 nucleotidesPf6N2E2_5881 and Pf6N2E2_5882 are separated by 64 nucleotidesPf6N2E2_5882 and Pf6N2E2_5883 are separated by 216 nucleotides Pf6N2E2_5879 - FIG00955363: hypothetical protein, at 6,699,284 to 6,700,078 _5879 Pf6N2E2_5880 - hydrolase, alpha/beta fold family, at 6,700,075 to 6,700,926 _5880 Pf6N2E2_5881 - Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit, at 6,701,056 to 6,701,874 _5881 Pf6N2E2_5882 - Putative membrane protein, at 6,701,939 to 6,702,976 _5882 Pf6N2E2_5883 - FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8), at 6,703,193 to 6,703,915 _5883
Group Condition Pf6N2E2_5879 Pf6N2E2_5880 Pf6N2E2_5881 Pf6N2E2_5882 Pf6N2E2_5883
stress Choline Lysine 20 mM +0.1 +0.3 +0.2 -4.2 N.D.
stress L-Lysine 25 mM +0.1 +0.2 -0.1 -3.2 N.D.
stress deoxycholate 0.0125 M +0.0 -0.3 -0.2 -1.5 N.D.
stress sodium carbonate 0.0125 M -0.1 -0.0 -0.2 -1.1 N.D.
stress sodium carbonate 0.0125 M -0.1 -0.1 -0.1 -1.2 N.D.
stress Zinc chloride 0.0000015625 M -0.1 +0.0 +0.2 -1.3 N.D.
stress RCH2 defined with Thallium(I) acetate 0.002 mg/ml -0.1 -0.0 -0.2 -0.8 N.D.
carbon source Ying_sugar7 rep C; time point 1 -0.3 +0.0 -0.3 -0.5 N.D.
lb LB no stress 24 hours -0.2 -0.3 +0.0 -0.6 N.D.
stress DEANONOate 0.000625 M -0.2 -0.2 -0.1 -0.5 N.D.
stress RCH2 defined with copper (II) chloride 0.03 mM -0.1 +0.1 -0.2 -0.7 N.D.
stress Bile salts 0.0125 M -0.5 -0.2 +0.2 -0.3 N.D.
nitrogen source Glucuronamide (N) -0.5 -0.0 +0.1 -0.4 N.D.
carbon source Ying_AminoAcid20 rep B; time point 3 +0.2 -0.2 -0.1 -0.6 N.D.
nitrogen source L-Lysine (N) -0.1 -0.1 +0.2 -0.7 N.D.
nitrogen source Glucuronamide (N) -0.5 -0.0 +0.2 -0.3 N.D.
nitrogen source L-Histidine (N) -0.3 -0.2 -0.3 +0.2 N.D.
carbon source RCH2_defined -0.1 +0.3 -0.2 -0.5 N.D.
nitrogen source nitrogen source nitrite 5mM -0.3 -0.1 -0.4 +0.3 N.D.
nitrogen source L-Serine (N) -0.3 +0.3 +0.0 -0.4 N.D.
carbon source RCH2_defined +0.0 +0.4 -0.1 -0.7 N.D.
stress RCH2 defined with copper (II) chloride 0.03 mM +0.1 +0.3 -0.5 -0.2 N.D.
nitrogen source nitrogen source nitrate 5mM -0.3 -0.1 -0.3 +0.6 N.D.
stress RCH2 defined with Nickel (II) chloride 0.04 mM -0.2 +0.4 -0.3 +0.1 N.D.
nitrogen source Glycine (N) -0.2 -0.4 +1.1 -0.2 N.D.
stress periodate 0.00125 M -0.0 -0.4 +0.3 +0.6 N.D.
carbon source octanoate (C) -0.2 +0.0 +0.3 +0.5 N.D.
motility inner cut, LB soft agar motility assay -0.2 +0.3 +0.1 +0.5 N.D.
nitrogen source Glycine (N) -0.3 -0.2 +1.1 +0.4 N.D.
nitrogen source nitrogen source nitrite 1mM +0.4 +0.2 -0.1 +0.7 N.D.
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