Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E2

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500 ntPf6N2E2_5837 and Pf6N2E2_5838 are separated by 177 nucleotidesPf6N2E2_5838 and Pf6N2E2_5839 are separated by 169 nucleotidesPf6N2E2_5839 and Pf6N2E2_5840 are separated by 12 nucleotidesPf6N2E2_5840 and Pf6N2E2_5841 are separated by 84 nucleotides Pf6N2E2_5837 - 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), at 6,654,362 to 6,655,252 _5837 Pf6N2E2_5838 - Hydroxypyruvate isomerase (EC 5.3.1.22), at 6,655,430 to 6,656,212 _5838 Pf6N2E2_5839 - Glyoxylate carboligase (EC 4.1.1.47), at 6,656,382 to 6,658,148 _5839 Pf6N2E2_5840 - hypothetical protein, at 6,658,161 to 6,658,340 _5840 Pf6N2E2_5841 - GlcG protein, at 6,658,425 to 6,658,784 _5841
Group Condition Pf6N2E2_5837 Pf6N2E2_5838 Pf6N2E2_5839 Pf6N2E2_5840 Pf6N2E2_5841
stress thiosulfate 0.25 M N.D. +0.3 +0.3 -1.1 -4.1
stress RCH2 defined with Nickel (II) chloride 0.04 mM N.D. -0.5 -0.0 -1.2 -2.4
stress RCH2 defined with copper (II) chloride 0.03 mM N.D. -0.4 -0.5 -0.8 -2.3
nitrogen source Gly-Glu (N) N.D. -0.2 -0.2 -1.3 -2.2
stress RCH2 defined with Thallium(I) acetate 0.002 mg/ml N.D. -0.0 -0.1 -1.0 -2.4
stress deoxycholate 0.0125 M N.D. +0.1 +0.6 +0.4 -4.5
stress Bile salts 0.0125 M N.D. -0.1 +0.5 -1.5 -2.2
nitrogen source nitrogen source nitrate 20mM N.D. -0.2 -0.2 -1.4 -1.2
stress Zinc chloride 0.0000015625 M N.D. +0.4 +0.2 +0.6 -4.2
stress RCH2 defined with Nickel (II) chloride 0.04 mM N.D. -0.2 -0.1 -0.3 -2.4
stress Hydroxylamine 0.5 M N.D. +0.2 +0.0 -0.6 -2.6
nitrogen source nitrogen source nitrate 20mM N.D. -0.2 -0.6 -1.0 -1.1
stress Cobalt chloride 0.6 mM N.D. +0.2 -0.2 -0.7 -2.1
stress Gjerstad humics 0.5 M N.D. -0.2 +0.1 -0.8 -1.8
stress RCH2 defined with Cobalt chloride 0.02 mM N.D. +0.1 -0.3 -0.0 -2.5
stress Chromium(III) Chloride Hexahydrate 0.000390625 M N.D. +0.0 +0.1 -0.7 -2.1
denitrifying Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate C N.D. -0.2 -0.1 +0.2 -2.6
denitrifying Nitrate reduction, replicate A N.D. -0.1 +0.2 +0.3 -2.5
denitrifying Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A N.D. +0.2 +0.1 +0.2 -2.5
carbon source Ying_Nucleobase14 rep B; time point 2 N.D. -1.7 -1.1 +0.9 +0.1
lb LB no stress 48 hours N.D. +0.4 +0.2 -1.4 -1.1
carbon source Ying_Nucleobase14 rep A; time point 2 N.D. -1.6 -1.2 +1.0 +0.1
stress Chloride 600 mM N.D. -0.2 -0.1 +0.7 -2.0
stress Rifampicin 0.003 mg/ml N.D. -0.7 -0.2 +1.0 -1.2
carbon source Ying_Nucleobase14 rep C; time point 2 N.D. -1.6 -0.9 +1.3 +0.1
carbon source Ying_Nucleobase14 rep A; time point 3 N.D. -1.0 -1.6 +1.8 +0.1
carbon source D-Galactose (C) N.D. -0.1 +0.0 +1.2 -1.8
carbon source Ying_Nucleobase14 rep B; time point 3 N.D. -0.8 -1.5 +1.8 +0.2
stress RCH2 defined with copper (II) chloride 0.03 mM N.D. -0.4 -0.5 -0.6 +1.4
carbon source Ying_Nucleobase14 rep C; time point 3 N.D. -0.8 -1.5 +2.3 +0.1
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