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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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500 nt
Pf6N2E2_5829 and Pf6N2E2_5830 are separated by 71 nucleotides
Pf6N2E2_5830 and Pf6N2E2_5831 are separated by 60 nucleotides
Pf6N2E2_5831 and Pf6N2E2_5832 are separated by 30 nucleotides
Pf6N2E2_5832 and Pf6N2E2_5833 are separated by 93 nucleotides
Pf6N2E2_5829 - FIG00955145: hypothetical protein, at 6,646,262 to 6,646,792
_5829
Pf6N2E2_5830 - FIG00960829: hypothetical protein, at 6,646,864 to 6,647,055
_5830
Pf6N2E2_5831 - Major facilitator family transporter, at 6,647,116 to 6,648,582
_5831
Pf6N2E2_5832 - Sulfate and thiosulfate binding protein CysP, at 6,648,613 to 6,649,611
_5832
Pf6N2E2_5833 - Potassium voltage-gated channel subfamily KQT; possible potassium channel, VIC family, at 6,649,705 to 6,650,529
_5833
Group
Condition
Pf6N2E2
_5829
Pf6N2E2
_5830
Pf6N2E2
_5831
Pf6N2E2
_5832
Pf6N2E2
_5833
stress
chromate 0.0000015625 M
+0.0
-0.3
-0.2
-3.5
-0.1
stress
chromate 0.0000015625 M
-0.2
-0.2
-0.2
-2.8
-0.1
carbon source
Ying_OrganicAcid7 rep B; time point 3
+0.1
-1.2
-0.0
-0.1
-0.5
carbon source
Ying_AminoAcid20 rep B; time point 3
-0.4
-0.9
-0.0
+0.1
-0.3
carbon source
Ying_Others16 rep A; time point 3
-0.2
-0.9
+0.0
+0.0
-0.5
carbon source
Ying_all64 rep A; time point 3
-0.2
-0.9
+0.1
-0.0
-0.3
carbon source
Ying_OrganicAcid7 rep C; time point 3
-0.0
-0.7
+0.0
-0.2
-0.6
carbon source
Ying_Others16 rep B; time point 3
-0.0
-0.9
-0.1
+0.1
-0.4
carbon source
Ying_Nucleobase14 rep C; time point 3
+0.1
-1.1
+0.0
-0.1
-0.2
nitrogen source
L-Serine (N)
-0.1
-0.8
-0.1
-0.2
-0.1
stress
Manganese (II) chloride tetrahydrate 0.00078125 M
-0.1
-0.7
+0.1
-0.3
-0.3
stress
sodium iodate 0.005 M
-0.1
-1.0
-0.0
-0.2
+0.1
carbon source
L-Leucine (C)
+0.0
-1.3
+0.0
+0.1
-0.1
lb
LB no stress 48 hours
-0.2
-1.0
+0.0
-0.1
+0.2
stress
RCH2 defined with Zinc 0.032 mM
+0.1
-0.7
-0.2
-0.1
-0.2
carbon source
Ying_AminoAcid20 rep C; time point 3
-0.1
-0.9
+0.1
+0.0
-0.2
carbon source
D-Fructose (C)
-0.1
+0.4
-0.4
-0.0
-0.3
stress
Nickel (II) chloride 0.0025 M
-0.3
-0.6
+0.1
+0.1
+0.3
stress
Zinc chloride 0.0000015625 M
-0.3
-0.2
+0.2
-0.4
+0.4
stress
Chloride 600 mM
-0.3
+0.5
+0.2
-0.1
-0.4
stress
periodate 0.00125 M
-0.1
+0.5
-0.5
-0.0
+0.2
stress
RCH2 defined with copper (II) chloride 0.03 mM
-0.2
-0.3
+0.2
+0.6
-0.1
stress
RCH2 defined with copper (II) chloride 0.03 mM
+0.1
+0.5
-0.2
+0.5
-0.3
carbon source
Ying_sugar7 rep B; time point 2
-0.2
+1.0
-0.1
-0.0
+0.1
nitrogen source
nitrogen source nitrite 1mM
+0.3
+0.6
-0.1
+0.2
-0.3
stress
Magnesium chloride 0.125 M
-0.4
+0.7
+0.1
+0.4
-0.0
stress
RCH2 defined with Nickel (II) chloride 0.04 mM
-0.3
+0.5
-0.0
+0.6
+0.0
carbon source
Carbon source Sucrose 5 mM
+0.4
+0.6
-0.1
+0.2
+0.1
stress
RCH2 defined with Thallium(I) acetate 0.002 mg/ml
-0.1
+0.3
+0.1
+0.7
+0.1
stress
deoxycholate 0.0125 M
+0.4
+0.7
-0.1
+0.3
-0.1
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Pf6N2E2_5831
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