Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E2

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500 ntPf6N2E2_5801 and Pf6N2E2_5802 are separated by 64 nucleotidesPf6N2E2_5802 and Pf6N2E2_5803 are separated by 147 nucleotidesPf6N2E2_5803 and Pf6N2E2_5804 are separated by 54 nucleotidesPf6N2E2_5804 and Pf6N2E2_5805 overlap by 4 nucleotides Pf6N2E2_5801 - FIG137887: membrane protein related to purine degradation, at 6,618,650 to 6,619,945 _5801 Pf6N2E2_5802 - Ureidoglycolate hydrolase (EC 3.5.3.19), at 6,620,010 to 6,620,513 _5802 Pf6N2E2_5803 - Allantoicase (EC 3.5.3.4), at 6,620,661 to 6,621,656 _5803 Pf6N2E2_5804 - 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) decarboxylase, at 6,621,711 to 6,622,226 _5804 Pf6N2E2_5805 - Uricase (urate oxidase) (EC 1.7.3.3), at 6,622,223 to 6,623,164 _5805
Group Condition Pf6N2E2_5801 Pf6N2E2_5802 Pf6N2E2_5803 Pf6N2E2_5804 Pf6N2E2_5805
carbon source Ying_Nucleobase14 rep B; time point 3 -1.3 -2.1 -2.8 -0.5 -1.3
carbon source Ying_Nucleobase14 rep A; time point 3 -1.2 -1.8 -2.8 -0.6 -1.3
carbon source Ying_Nucleobase14 rep C; time point 3 -1.2 -2.2 -2.8 -0.6 -1.0
carbon source Ying_Nucleobase14 rep A; time point 2 -0.5 -1.6 -2.6 -0.5 -1.3
carbon source Ying_Nucleobase14 rep C; time point 2 -0.4 -1.6 -2.6 -0.5 -1.3
carbon source Ying_Nucleobase14 rep B; time point 2 -0.6 -1.4 -2.6 -0.3 -1.4
carbon source Ying_Nucleobase14 rep B; time point 1 -0.3 -1.5 -2.3 -0.5 -1.2
carbon source Ying_Nucleobase14 rep C; time point 1 -0.1 -1.1 -2.1 -0.5 -1.1
carbon source Ying_all64 rep B; time point 3 +0.0 -0.2 -1.7 -0.6 -1.2
carbon source Ying_all64 rep A; time point 3 +0.1 -0.3 -1.8 -0.3 -1.3
carbon source Ying_all64 rep C; time point 3 +0.1 -0.2 -1.6 -0.5 -1.2
stress Cobalt chloride 0.6 mM -0.1 -0.4 +0.1 -0.9 -0.5
stress Cobalt chloride 0.4 mM -0.3 -0.4 -0.2 -0.0 -0.5
stress dimethyl sulfone 0.25 M -0.1 -0.0 -0.3 +0.1 -1.1
nitrogen source L-Isoleucine (N) +0.0 -0.5 -0.3 +0.0 -0.6
stress Vancomycin 0.24 mg/ml -0.1 +0.0 -0.2 -0.9 -0.2
motility inner cut, LB soft agar motility assay -0.1 +0.1 -0.4 -0.7 -0.3
stress dimethyl sulfone 0.25 M -0.2 +0.1 +0.0 -0.9 -0.3
nitrogen source Gly-Glu (N) +0.0 -0.3 -0.3 +0.1 -0.7
nitrogen source nitrogen source nitrite 5mM -0.2 -0.2 +0.5 -0.8 -0.3
carbon source octanoate (C) -0.3 -0.2 +0.4 -0.7 -0.0
carbon source Ying_OrganicAcid7 rep A; time point 3 +0.2 -0.3 +0.3 -0.7 -0.1
nitrogen source Gly-Glu (N) +0.1 +0.0 -0.5 +0.3 -0.4
stress perchlorate 0.125 M -0.1 +0.4 +0.2 -0.8 -0.0
nitrogen source Putrescine (N) +0.2 +0.1 -0.6 +0.3 -0.2
stress bromate 0.05 M +0.1 +0.1 -0.3 +0.4 -0.5
stress molybdate 0.25 M +0.4 -0.2 -0.2 +0.5 +0.1
motility outer cut, LB soft agar motility assay +0.1 +0.4 +0.2 +0.5 -0.5
carbon source D-Galactose (C) +0.3 -0.1 +0.1 +0.8 -0.3
stress Bile salts 0.0125 M -0.2 +0.2 +0.6 +0.3 -0.1
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