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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf6N2E2_5755 and Pf6N2E2_5756 are separated by 276 nucleotides
Pf6N2E2_5756 and Pf6N2E2_5757 are separated by 953 nucleotides
Pf6N2E2_5757 and Pf6N2E2_5758 are separated by 10 nucleotides
Pf6N2E2_5758 and Pf6N2E2_5759 are separated by 80 nucleotides
Pf6N2E2_5755 - FIG00956435: hypothetical protein, at 6,568,470 to 6,568,952
_5755
Pf6N2E2_5756 - Glutamate synthase [NADPH] large chain (EC 1.4.1.13), at 6,569,229 to 6,569,453
_5756
Pf6N2E2_5757 - hypothetical protein, at 6,570,407 to 6,570,595
_5757
Pf6N2E2_5758 - FIG00957314: hypothetical protein, at 6,570,606 to 6,570,857
_5758
Pf6N2E2_5759 - DNA recombination protein RmuC, at 6,570,938 to 6,572,431
_5759
Group
Condition
Pf6N2E2
_5755
Pf6N2E2
_5756
Pf6N2E2
_5757
Pf6N2E2
_5758
Pf6N2E2
_5759
stress
Nickel (II) chloride 0.0025 M
-0.6
-1.5
-0.5
-2.0
+0.0
stress
Sisomicin 0.0016 mg/ml
-0.6
-0.3
-0.9
-1.1
-0.3
stress
molybdate 0.25 M
+0.4
-0.8
-0.9
-1.3
-0.3
carbon source
octanoate (C)
-0.4
-1.1
+0.1
-1.3
-0.0
nitrogen source
nitrogen source nitrate 20mM
+0.0
-0.3
-0.6
-1.8
+0.0
motility
outer cut, LB soft agar motility assay
-0.1
+0.1
-0.4
-1.7
-0.5
nitrogen source
nitrogen source nitrite 5mM
+0.1
-1.1
-0.2
-1.1
-0.2
stress
Cobalt chloride 0.6 mM
+0.2
-1.0
+0.3
-1.9
-0.2
nitrogen source
nitrogen source Ammonium chloride 20mM
+0.1
-1.1
+0.0
+0.1
-1.5
stress
Vancomycin 0.24 mg/ml
+0.8
-0.1
-1.1
-1.3
-0.5
stress
Nickel (II) chloride 1.5 mM
-0.5
+0.2
-0.1
-1.6
-0.1
stress
thiosulfate 0.25 M
+0.2
-0.0
-0.3
-0.8
-1.3
nitrogen source
L-Serine (N)
+0.4
-0.7
-0.8
-0.7
-0.3
stress
RCH2 defined with Cobalt chloride 0.04 mM
+0.0
-2.0
-0.1
+0.2
-0.1
nitrogen source
nitrogen source nitrite 0.5mM
-0.3
-1.1
+0.3
-0.3
-0.4
stress
sodium iodide 0.125 M
+0.5
-0.6
-0.6
-0.7
-0.1
stress
Bile salts 0.0125 M
+0.7
-0.5
-1.1
+0.4
-0.1
stress
Phosphomycin 0.004 mg/ml
-0.3
-1.1
+0.3
+1.2
-0.2
stress
DEANONOate 0.000625 M
-0.0
-0.7
+0.6
+0.7
-0.4
nitrogen source
nitrogen source nitrate 20mM
+0.1
+1.3
+0.1
-0.7
-0.5
nitrogen source
Parabanic Acid (N)
-0.5
-0.9
+0.4
+1.2
+0.1
nitrogen source
nitrogen source nitrite 1mM
+0.2
+1.2
-0.2
-0.2
-0.7
stress
periodate 0.00125 M
+0.2
-0.7
+0.7
+0.7
-0.4
lb
LB no stress 48 hours
+0.3
+0.5
+0.9
-0.8
-0.0
stress
bromate 0.05 M
-0.1
-0.6
+1.3
+1.0
-0.5
nitrogen source
Glycine (N)
+0.3
-0.8
+0.4
+0.8
+0.3
stress
DEANONOate 0.000625 M
-0.6
-0.1
+0.5
+1.3
-0.1
stress
deoxycholate 0.0125 M
+1.2
+0.7
-0.2
+0.5
-0.7
nitrogen source
L-Aspartic Acid (N)
+0.4
-0.2
+0.5
+1.2
-0.1
stress
PTLB purified from Pseudomonas sp. FW300-N2E2 0.05 x
+0.2
+0.5
-0.1
+1.2
+0.4
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