Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E2

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500 ntPf6N2E2_556 and Pf6N2E2_557 are separated by 24 nucleotidesPf6N2E2_557 and Pf6N2E2_558 are separated by 63 nucleotidesPf6N2E2_558 and Pf6N2E2_559 are separated by 18 nucleotidesPf6N2E2_559 and Pf6N2E2_560 overlap by 4 nucleotides Pf6N2E2_556 - hypothetical protein, at 627,959 to 628,075 _556 Pf6N2E2_557 - Uncharacterized protein homologous to Paeru. PA2364, at 628,100 to 628,549 _557 Pf6N2E2_558 - Uncharacterized protein ImpJ/VasE, at 628,613 to 629,944 _558 Pf6N2E2_559 - Inner membrane protein DotU, at 629,963 to 630,727 _559 Pf6N2E2_560 - IcmF-related protein, at 630,724 to 634,548 _560
Group Condition Pf6N2E2_556 Pf6N2E2_557 Pf6N2E2_558 Pf6N2E2_559 Pf6N2E2_560
stress Cobalt chloride 0.6 mM N.D. -0.8 -1.0 +0.2 -0.3
stress Cobalt chloride 0.6 mM N.D. -0.5 -0.7 -0.4 -0.1
stress Cobalt chloride 0.6 mM N.D. -0.3 -0.7 -0.2 -0.4
stress Nickel (II) chloride 0.0025 M N.D. -0.4 -0.1 -0.8 -0.0
stress Cobalt chloride 0.16 mM N.D. -0.2 -0.7 -0.2 -0.3
lb LB no stress 24 hours N.D. -0.5 -0.4 -0.2 -0.1
stress Vanillyl Alcohol 0.005 M N.D. -0.4 -0.4 -0.3 -0.2
stress deoxycholate 0.0125 M N.D. -0.2 -0.0 -0.9 -0.1
stress Cobalt chloride 0.4 mM N.D. -0.7 -0.3 +0.1 -0.3
stress DEANONOate 0.000625 M N.D. -0.2 -0.4 -0.6 +0.0
stress Cobalt chloride 0.4 mM N.D. -0.4 -0.8 +0.0 +0.0
stress Cobalt chloride 0.6 mM N.D. -0.6 -0.5 +0.1 -0.1
carbon source Ying_sugar7 rep C; time point 2 N.D. -0.4 -0.2 -0.4 -0.0
vitamin With vitamins t2 N.D. +0.1 -0.7 -0.2 -0.1
carbon source Ying_Others16 rep B; time point 2 N.D. -0.7 -0.3 -0.1 +0.1
stress Chloramphenicol 0.008 mg/ml N.D. -0.4 -0.3 -0.3 +0.1
motility inner cut, LB soft agar motility assay N.D. -0.4 -0.4 -0.0 +0.2
lb LB no stress 48 hours N.D. +0.2 -0.4 -0.4 +0.0
stress RCH2 defined with Cobalt chloride 0.02 mM N.D. -0.4 +0.1 -0.4 +0.2
nitrogen source Glucuronamide (N) N.D. -0.1 -0.4 +0.3 -0.3
carbon source Carbon source Sucrose 5 mM N.D. -0.5 -0.4 +0.1 +0.3
stress Manganese (II) chloride tetrahydrate 0.00078125 M N.D. -0.3 -0.4 +0.2 +0.1
stress thiosulfate 0.25 M N.D. -0.6 +0.5 -0.1 -0.0
nitrogen source L-Glutamic (N) N.D. -0.3 -0.1 +0.5 -0.2
nitrogen source L-Serine (N) N.D. +0.2 -0.6 +0.3 -0.0
stress Nickel (II) chloride 1 mM N.D. +0.1 -0.6 +0.1 +0.3
stress Nickel (II) chloride 1.5 mM N.D. -0.5 -0.0 +0.4 +0.2
carbon source octanoate (C) N.D. +0.3 +0.2 -0.5 +0.1
stress RCH2 defined with Nickel (II) chloride 0.04 mM N.D. -0.5 +0.3 +0.2 +0.1
stress sodium iodate 0.005 M N.D. +0.2 +0.5 -0.2 +0.3
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