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Protein
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Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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500 nt
Pf6N2E2_5560 and Pf6N2E2_5561 are separated by 129 nucleotides
Pf6N2E2_5561 and Pf6N2E2_5562 are separated by 129 nucleotides
Pf6N2E2_5562 and Pf6N2E2_5563 are separated by 201 nucleotides
Pf6N2E2_5563 and Pf6N2E2_5564 are separated by 50 nucleotides
Pf6N2E2_5560 - Sigma-54 dependent transcriptional regulator/sensory box protein, at 6,377,934 to 6,379,442
_5560
Pf6N2E2_5561 - LysR-family transcriptional regulator clustered with PA0057, at 6,379,572 to 6,380,459
_5561
Pf6N2E2_5562 - Metallo-beta-lactamase superfamily protein PA0057, at 6,380,589 to 6,381,467
_5562
Pf6N2E2_5563 - Rrf2-linked NADH-flavin reductase, at 6,381,669 to 6,382,283
_5563
Pf6N2E2_5564 - Membrane protein glpM, at 6,382,334 to 6,382,672
_5564
Group
Condition
Pf6N2E2
_5560
Pf6N2E2
_5561
Pf6N2E2
_5562
Pf6N2E2
_5563
Pf6N2E2
_5564
nitrogen source
Glycine (N)
-5.3
+0.1
+0.0
+0.1
+0.1
stress
RCH2 defined with Nickel (II) chloride 0.04 mM
-2.9
+0.0
-0.2
+0.2
-0.0
nitrogen source
L-Asparagine (N)
+0.0
-0.2
-0.3
+0.2
-2.5
nitrogen source
nitrogen source nitrite 0.5mM
-2.7
+0.2
+0.2
-0.3
-0.1
nitrogen source
Glycine (N)
-3.2
+0.1
-0.0
+0.2
+0.2
nitrogen source
nitrogen source nitrite 1mM
-2.9
+0.2
+0.2
-0.1
-0.0
carbon source
Carbon source Sucrose 2.5 mM
-0.7
-0.4
-0.2
+0.1
-1.4
stress
Cadmium chloride hemipentahydrate 0.000015625 M
-2.2
-0.0
-0.1
-0.0
-0.0
nitrogen source
nitrogen source nitrite 5mM
-2.7
+0.0
+0.3
+0.1
-0.0
nitrogen source
L-Serine (N)
-3.2
+0.6
+0.0
+0.2
+0.1
nitrogen source
nitrogen source Ammonium chloride 20mM
-1.7
-0.2
-0.1
-0.0
-0.0
stress
Cadmium chloride hemipentahydrate 0.00005 M
-1.9
-0.2
-0.1
+0.1
+0.0
stress
Cadmium chloride hemipentahydrate 0.000015625 M
-1.9
-0.0
-0.0
-0.1
+0.0
stress
RCH2 defined with copper (II) chloride 0.03 mM
-2.0
+0.0
-0.1
+0.1
-0.1
carbon source
Carbon source Sucrose 2.5 mM
-0.4
-0.1
-0.1
+0.1
-1.4
nitrogen source
nitrogen source nitrate 20mM
-1.7
+0.1
+0.1
-0.1
-0.2
carbon source
Carbon source Sucrose 5 mM
-0.6
-0.1
+0.1
+0.1
-1.4
nitrogen source
nitrogen source nitrite 5mM
-1.7
+0.4
+0.1
-0.3
-0.3
nitrogen source
nitrogen source Ammonium chloride 20mM
-2.0
+0.1
+0.2
-0.1
+0.0
stress
DEANONOate 0.000625 M
-1.7
+0.2
-0.1
+0.1
-0.1
stress
RCH2 defined with Cobalt chloride 0.02 mM
-1.7
+0.1
+0.0
+0.0
-0.0
nitrogen source
nitrogen source nitrite 0.5mM
-1.4
-0.0
+0.2
-0.0
-0.3
nitrogen source
Gly-Glu (N)
-0.6
-0.2
-0.2
+0.1
-0.7
nitrogen source
L-Serine (N)
-1.7
+0.0
+0.2
+0.1
-0.1
nitrogen source
nitrogen source nitrate 5mM
-1.5
+0.3
+0.0
-0.2
+0.1
nitrogen source
L-Asparagine (N)
+0.2
+0.1
+0.1
-0.1
-1.6
stress
RCH2 defined with Cobalt chloride 0.04 mM
-1.4
-0.1
-0.0
-0.1
+0.4
motility
inner cut, LB soft agar motility assay
-1.8
+0.3
-0.1
+0.2
+0.2
carbon source
Carbon source Sucrose 10 mM
+0.3
+0.2
-0.0
+0.1
-1.2
carbon source
Ying_OrganicAcid7 rep C; time point 3
+0.1
+0.2
+0.2
+0.2
-1.2
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