Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E2

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500 ntPf6N2E2_5560 and Pf6N2E2_5561 are separated by 129 nucleotidesPf6N2E2_5561 and Pf6N2E2_5562 are separated by 129 nucleotidesPf6N2E2_5562 and Pf6N2E2_5563 are separated by 201 nucleotidesPf6N2E2_5563 and Pf6N2E2_5564 are separated by 50 nucleotides Pf6N2E2_5560 - Sigma-54 dependent transcriptional regulator/sensory box protein, at 6,377,934 to 6,379,442 _5560 Pf6N2E2_5561 - LysR-family transcriptional regulator clustered with PA0057, at 6,379,572 to 6,380,459 _5561 Pf6N2E2_5562 - Metallo-beta-lactamase superfamily protein PA0057, at 6,380,589 to 6,381,467 _5562 Pf6N2E2_5563 - Rrf2-linked NADH-flavin reductase, at 6,381,669 to 6,382,283 _5563 Pf6N2E2_5564 - Membrane protein glpM, at 6,382,334 to 6,382,672 _5564
Group Condition Pf6N2E2_5560 Pf6N2E2_5561 Pf6N2E2_5562 Pf6N2E2_5563 Pf6N2E2_5564
nitrogen source Glycine (N) -5.3 +0.1 +0.0 +0.1 +0.1
stress RCH2 defined with Nickel (II) chloride 0.04 mM -2.9 +0.0 -0.2 +0.2 -0.0
nitrogen source L-Asparagine (N) +0.0 -0.2 -0.3 +0.2 -2.5
nitrogen source nitrogen source nitrite 0.5mM -2.7 +0.2 +0.2 -0.3 -0.1
nitrogen source Glycine (N) -3.2 +0.1 -0.0 +0.2 +0.2
nitrogen source nitrogen source nitrite 1mM -2.9 +0.2 +0.2 -0.1 -0.0
carbon source Carbon source Sucrose 2.5 mM -0.7 -0.4 -0.2 +0.1 -1.4
stress Cadmium chloride hemipentahydrate 0.000015625 M -2.2 -0.0 -0.1 -0.0 -0.0
nitrogen source nitrogen source nitrite 5mM -2.7 +0.0 +0.3 +0.1 -0.0
nitrogen source L-Serine (N) -3.2 +0.6 +0.0 +0.2 +0.1
nitrogen source nitrogen source Ammonium chloride 20mM -1.7 -0.2 -0.1 -0.0 -0.0
stress Cadmium chloride hemipentahydrate 0.00005 M -1.9 -0.2 -0.1 +0.1 +0.0
stress Cadmium chloride hemipentahydrate 0.000015625 M -1.9 -0.0 -0.0 -0.1 +0.0
stress RCH2 defined with copper (II) chloride 0.03 mM -2.0 +0.0 -0.1 +0.1 -0.1
carbon source Carbon source Sucrose 2.5 mM -0.4 -0.1 -0.1 +0.1 -1.4
nitrogen source nitrogen source nitrate 20mM -1.7 +0.1 +0.1 -0.1 -0.2
carbon source Carbon source Sucrose 5 mM -0.6 -0.1 +0.1 +0.1 -1.4
nitrogen source nitrogen source nitrite 5mM -1.7 +0.4 +0.1 -0.3 -0.3
nitrogen source nitrogen source Ammonium chloride 20mM -2.0 +0.1 +0.2 -0.1 +0.0
stress DEANONOate 0.000625 M -1.7 +0.2 -0.1 +0.1 -0.1
stress RCH2 defined with Cobalt chloride 0.02 mM -1.7 +0.1 +0.0 +0.0 -0.0
nitrogen source nitrogen source nitrite 0.5mM -1.4 -0.0 +0.2 -0.0 -0.3
nitrogen source Gly-Glu (N) -0.6 -0.2 -0.2 +0.1 -0.7
nitrogen source L-Serine (N) -1.7 +0.0 +0.2 +0.1 -0.1
nitrogen source nitrogen source nitrate 5mM -1.5 +0.3 +0.0 -0.2 +0.1
nitrogen source L-Asparagine (N) +0.2 +0.1 +0.1 -0.1 -1.6
stress RCH2 defined with Cobalt chloride 0.04 mM -1.4 -0.1 -0.0 -0.1 +0.4
motility inner cut, LB soft agar motility assay -1.8 +0.3 -0.1 +0.2 +0.2
carbon source Carbon source Sucrose 10 mM +0.3 +0.2 -0.0 +0.1 -1.2
carbon source Ying_OrganicAcid7 rep C; time point 3 +0.1 +0.2 +0.2 +0.2 -1.2
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