Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E2

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500 ntPf6N2E2_5549 and Pf6N2E2_5550 are separated by 4 nucleotidesPf6N2E2_5550 and Pf6N2E2_5551 are separated by 53 nucleotidesPf6N2E2_5551 and Pf6N2E2_5552 are separated by 10 nucleotidesPf6N2E2_5552 and Pf6N2E2_5553 are separated by 476 nucleotides Pf6N2E2_5549 - Copper resistance protein D, at 6,364,474 to 6,365,385 _5549 Pf6N2E2_5550 - Copper resistance protein C precursor, at 6,365,390 to 6,365,776 _5550 Pf6N2E2_5551 - Copper resistance protein B, at 6,365,830 to 6,366,750 _5551 Pf6N2E2_5552 - Multicopper oxidase, at 6,366,761 to 6,368,578 _5552 Pf6N2E2_5553 - Quinolinate synthetase (EC 2.5.1.72), at 6,369,055 to 6,370,113 _5553
Group Condition Pf6N2E2_5549 Pf6N2E2_5550 Pf6N2E2_5551 Pf6N2E2_5552 Pf6N2E2_5553
stress copper (II) chloride 3 mM +2.3 +1.7 -5.2 -5.1 +1.2
carbon source octanoate (C) -0.1 -0.1 -0.3 +0.0 -4.2
nitrogen source L-Arginine (N) -0.2 -0.3 -0.2 +0.1 -4.0
carbon source L-Histidine (C) -0.0 -0.4 -0.1 -0.2 -3.6
nitrogen source L-Arginine (N) +0.1 -0.1 -0.3 +0.0 -4.0
carbon source octanoate (C) +0.0 +0.0 +0.2 -0.2 -4.2
carbon source D-Gluconic Acid (C) -0.2 +0.0 +0.1 +0.0 -3.7
nitrogen source L-Lysine (N) -0.3 -0.8 -0.2 +0.1 -2.6
carbon source Tween 20 (C) +0.1 -0.1 +0.5 +0.4 -4.2
carbon source L-Histidine (C) -0.2 -0.4 -0.0 -0.2 -2.5
vitamin No vitamins t2 +0.4 +0.6 -0.2 +0.0 -3.9
carbon source D-Gluconic Acid (C) -0.1 -0.1 +0.0 -0.0 -2.6
carbon source L-Arabinose (C) -0.1 -0.3 +0.1 +0.0 -2.5
vitamin No vitamins t1 +0.0 +0.2 -0.2 +0.0 -2.7
carbon source L-Arabinose (C) -0.0 -0.1 -0.0 -0.0 -2.4
nitrogen source L-Lysine (N) +0.0 +0.0 +0.1 +0.0 -2.8
denitrifying Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate B +0.2 +0.2 +0.0 +0.2 -3.0
carbon source Ying_OrganicAcid7 rep A; time point 2 -0.2 -0.9 +0.2 +0.0 -1.4
carbon source D-Glucose (C) +0.1 -0.6 -0.1 +0.1 -1.8
carbon source D-Alanine (C) +0.0 +0.1 -0.7 +0.2 -1.8
carbon source D-Sorbitol (C) +0.1 -0.0 -0.1 +0.2 -2.3
denitrifying Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate C +0.1 +0.2 +0.0 +0.1 -2.6
carbon source m-Inositol (C) -0.1 +0.1 +0.6 +0.3 -2.9
denitrifying Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate A +0.4 -0.2 +0.3 +0.1 -2.7
carbon source propionate (C) -0.2 +0.3 -0.2 -0.0 -1.9
denitrifying Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate B +0.2 -0.1 +0.1 +0.1 -2.3
carbon source Tween 20 (C) -0.0 -0.1 +0.3 +0.3 -2.5
denitrifying Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A +0.1 +0.1 +0.1 +0.1 -2.2
carbon source D-Galactose (C) -0.1 -0.1 +0.2 +0.7 -1.7
carbon source D-Fructose (C) -0.1 -0.2 +0.7 +0.5 +2.8
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