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Protein
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Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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500 nt
Pf6N2E2_5540 and Pf6N2E2_5541 overlap by 1 nucleotides
Pf6N2E2_5541 and Pf6N2E2_5542 are separated by 17 nucleotides
Pf6N2E2_5542 and Pf6N2E2_5543 are separated by 52 nucleotides
Pf6N2E2_5543 and Pf6N2E2_5544 are separated by 81 nucleotides
Pf6N2E2_5540 - Tol biopolymer transport system, TolR protein, at 6,355,475 to 6,355,936
_5540
Pf6N2E2_5541 - TolA protein, at 6,355,936 to 6,357,012
_5541
Pf6N2E2_5542 - tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins, at 6,357,030 to 6,358,310
_5542
Pf6N2E2_5543 - 18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor, at 6,358,363 to 6,358,860
_5543
Pf6N2E2_5544 - TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain, at 6,358,942 to 6,359,706
_5544
Group
Condition
Pf6N2E2
_5540
Pf6N2E2
_5541
Pf6N2E2
_5542
Pf6N2E2
_5543
Pf6N2E2
_5544
stress
L-Lysine 25 mM
N.D.
N.D.
N.D.
N.D.
-4.6
stress
Magnesium chloride 0.125 M
N.D.
N.D.
N.D.
N.D.
-4.2
stress
Choline Lysine 20 mM
N.D.
N.D.
N.D.
N.D.
-4.2
stress
Hydroxylamine 0.5 M
N.D.
N.D.
N.D.
N.D.
-4.0
carbon source
D-Alanine (C)
N.D.
N.D.
N.D.
N.D.
-3.7
carbon source
D-Alanine (C)
N.D.
N.D.
N.D.
N.D.
-3.6
nitrogen source
D-Alanine (N)
N.D.
N.D.
N.D.
N.D.
-3.5
stress
thiosulfate 0.25 M
N.D.
N.D.
N.D.
N.D.
-3.5
stress
thiosulfate 0.25 M
N.D.
N.D.
N.D.
N.D.
-3.3
stress
deoxycholate 0.0125 M
N.D.
N.D.
N.D.
N.D.
-3.2
stress
Bile salts 0.0125 M
N.D.
N.D.
N.D.
N.D.
-3.1
stress
sodium carbonate 0.0125 M
N.D.
N.D.
N.D.
N.D.
-3.0
stress
Rifampicin 0.003 mg/ml
N.D.
N.D.
N.D.
N.D.
-3.0
stress
Magnesium chloride 0.125 M
N.D.
N.D.
N.D.
N.D.
-3.0
stress
dimethyl sulfone 0.25 M
N.D.
N.D.
N.D.
N.D.
-2.8
stress
dimethyl sulfone 0.25 M
N.D.
N.D.
N.D.
N.D.
-2.5
stress
Zinc chloride 0.0000015625 M
N.D.
N.D.
N.D.
N.D.
-2.4
stress
molybdate 0.25 M
N.D.
N.D.
N.D.
N.D.
-2.4
nitrogen source
L-Phenylalanine (N)
N.D.
N.D.
N.D.
N.D.
-2.4
stress
Calcium chloride 0.0125 M
N.D.
N.D.
N.D.
N.D.
-2.2
stress
sodium carbonate 0.0125 M
N.D.
N.D.
N.D.
N.D.
-2.2
carbon source
octanoate (C)
N.D.
N.D.
N.D.
N.D.
-2.0
stress
Cobalt chloride 0.6 mM
N.D.
N.D.
N.D.
N.D.
-2.0
stress
Cobalt chloride 0.6 mM
N.D.
N.D.
N.D.
N.D.
-2.0
stress
Calcium chloride 0.0125 M
N.D.
N.D.
N.D.
N.D.
-1.9
stress
Fusidic 0.4 mg/ml
N.D.
N.D.
N.D.
N.D.
-1.9
nitrogen source
L-Phenylalanine (N)
N.D.
N.D.
N.D.
N.D.
-1.8
stress
Nickel (II) chloride 0.0025 M
N.D.
N.D.
N.D.
N.D.
-1.8
stress
4-Hydroxyacetophenone 0.00025 M
N.D.
N.D.
N.D.
N.D.
-1.8
stress
Cobalt chloride 0.6 mM
N.D.
N.D.
N.D.
N.D.
-1.7
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