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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf6N2E2_5521 and Pf6N2E2_5522 are separated by 142 nucleotides
Pf6N2E2_5522 and Pf6N2E2_5523 are separated by 152 nucleotides
Pf6N2E2_5523 and Pf6N2E2_5524 are separated by 170 nucleotides
Pf6N2E2_5524 and Pf6N2E2_5525 are separated by 888 nucleotides
Pf6N2E2_5521 - 2-dehydropantoate 2-reductase (EC 1.1.1.169), at 6,340,919 to 6,341,836
_5521
Pf6N2E2_5522 - FIG001943: hypothetical protein YajQ, at 6,341,979 to 6,342,464
_5522
Pf6N2E2_5523 - Small-conductance mechanosensitive channel, at 6,342,617 to 6,343,459
_5523
Pf6N2E2_5524 - Outer membrane porin, OprD family, at 6,343,630 to 6,344,883
_5524
Pf6N2E2_5525 - Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases, at 6,345,772 to 6,346,197
_5525
Group
Condition
Pf6N2E2
_5521
Pf6N2E2
_5522
Pf6N2E2
_5523
Pf6N2E2
_5524
Pf6N2E2
_5525
carbon source
D-Galactose (C)
-0.8
+0.3
-1.3
-3.7
-1.1
carbon source
D-Galactose (C)
-0.5
+0.4
-2.2
-3.3
-0.7
stress
Hydroxylamine 0.5 M
+0.0
-4.2
-2.1
-0.0
+0.1
nitrogen source
nitrogen source nitrate 5mM
-0.2
-1.5
-2.5
-0.7
-0.3
nitrogen source
nitrogen source nitrite 1mM
-0.1
-0.8
-2.7
-1.4
-0.1
stress
pyrophosphate 0.0025 M
-0.2
-0.9
-3.6
-0.6
+0.3
nitrogen source
nitrogen source nitrite 1mM
-0.4
-1.3
-1.5
-1.5
-0.1
nitrogen source
nitrogen source nitrite 5mM
-0.3
-0.7
-1.9
-1.6
-0.2
stress
Gjerstad humics 0.5 M
+0.1
-1.0
-2.7
-0.6
+0.1
stress
Hydrochloric Acid 0.005 M
+0.1
-1.7
-2.2
-0.3
-0.0
nitrogen source
nitrogen source Ammonium chloride 20mM
-0.1
-0.5
-2.5
-1.0
+0.1
stress
Hydroxide 0.05 M
+0.4
-0.8
-3.1
-0.2
-0.2
stress
Hydroxide 0.05 M
-0.1
-1.2
-2.2
-0.2
-0.1
stress
sodium iodate 0.005 M
+0.0
-1.3
-2.6
-0.3
+0.3
stress
DEANONOate 0.000625 M
-1.3
-0.6
-1.9
-0.5
+0.5
nitrogen source
nitrogen source nitrate 5mM
+0.1
-0.2
-2.4
-1.3
+0.0
nitrogen source
nitrogen source nitrite 0.5mM
+0.0
-0.9
-0.7
-1.8
+0.0
nitrogen source
nitrogen source Ammonium chloride 20mM
-0.2
-1.2
-0.3
-1.5
+0.0
nitrogen source
nitrogen source nitrite 0.5mM
-0.1
-0.7
-1.1
-1.4
+0.1
stress
Gjerstad humics 0.5 M
+0.1
-0.6
-2.2
-0.5
+0.1
stress
dimethyl sulfone 0.25 M
+0.1
-1.2
-1.6
-0.3
+0.3
stress
Vanillyl Alcohol 0.005 M
+0.2
-0.5
-2.2
-0.3
+0.1
stress
Bile salts 0.0125 M
-0.0
-1.8
-1.9
-0.4
+1.8
stress
periodate 0.00125 M
+0.1
-0.3
-2.2
-0.4
+0.7
stress
deoxycholate 0.0125 M
+0.5
+0.4
-3.5
-0.4
+1.2
stress
RCH2 defined with Cobalt chloride 0.04 mM
-0.7
+0.7
-0.6
-1.4
+0.3
stress
RCH2 defined with Cobalt chloride 0.04 mM
-0.4
+0.9
-0.8
-1.5
+0.2
stress
Lomefloxacin 0.0002 mM
-0.0
+0.1
-0.3
-0.3
+2.8
stress
Vancomycin 0.24 mg/ml
+0.0
+0.6
-0.5
+0.1
+3.0
stress
Doxycycline hyclate 0.0001 mg/ml
-0.2
+0.2
-0.0
+0.3
+4.0
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