Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E2

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500 ntPf6N2E2_5465 and Pf6N2E2_5466 overlap by 4 nucleotidesPf6N2E2_5466 and Pf6N2E2_5467 are separated by 227 nucleotidesPf6N2E2_5467 and Pf6N2E2_5468 are separated by 271 nucleotidesPf6N2E2_5468 and Pf6N2E2_5469 are separated by 24 nucleotides Pf6N2E2_5465 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 6,277,774 to 6,279,648 _5465 Pf6N2E2_5466 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 6,279,645 to 6,281,936 _5466 Pf6N2E2_5467 - Response regulator, at 6,282,164 to 6,283,531 _5467 Pf6N2E2_5468 - Nudix hydrolase family protein PA3470, at 6,283,803 to 6,284,219 _5468 Pf6N2E2_5469 - L-lysine permease, at 6,284,244 to 6,284,882 _5469
Group Condition Pf6N2E2_5465 Pf6N2E2_5466 Pf6N2E2_5467 Pf6N2E2_5468 Pf6N2E2_5469
nitrogen source L-Serine (N) -0.1 -0.1 +0.1 -1.7 +0.0
carbon source Glycerol (C) -0.1 -0.1 -0.0 -0.9 -0.4
carbon source D-Galactose (C) -0.5 -0.3 +0.1 -1.0 +0.1
carbon source L-Isoleucine (C) -0.3 -0.1 +0.1 -0.2 -0.9
carbon source D-Fructose (C) -0.2 +0.0 +0.1 -1.2 +0.1
stress Cobalt chloride 0.6 mM -0.4 -0.0 -0.5 -0.4 +0.3
nitrogen source Glycine (N) -0.3 -0.1 +0.2 -0.8 -0.0
stress Bile salts 0.0125 M -0.7 -0.2 -0.2 -0.4 +0.5
carbon source Ying_OrganicAcid7 rep B; time point 3 +0.1 -0.5 -1.0 +0.5 -0.0
carbon source Ying_OrganicAcid7 rep C; time point 3 +0.0 -0.4 -0.7 +0.5 -0.2
nitrogen source L-Serine (N) -0.7 -0.1 +0.4 +0.1 -0.3
nitrogen source Cytidine (N) -0.2 -0.1 +0.6 -0.8 -0.2
nitrogen source Glucuronamide (N) -0.2 -0.1 +0.3 -1.0 +0.4
motility inner cut, LB soft agar motility assay -0.2 -0.0 +0.5 -0.7 -0.1
carbon source D-Trehalose (C) -0.6 -0.1 +0.3 -0.4 +0.1
carbon source Ying_OrganicAcid7 rep A; time point 3 -0.3 -0.2 -0.6 +0.5 +0.2
carbon source 4-Hydroxybenzoic Acid (C) -0.1 -0.0 +0.3 -0.9 +0.2
stress RCH2 defined with Zinc 0.016 mM -0.2 -0.2 +0.3 -0.7 +0.2
stress deoxycholate 0.0125 M +0.2 -0.2 -0.5 -0.4 +0.4
stress DEANONOate 0.000625 M -0.5 +0.1 +0.2 -0.5 +0.3
stress Phosphomycin 0.004 mg/ml -0.5 +0.1 -0.0 +0.5 -0.5
carbon source Ying_AminoAcid20 rep B; time point 3 -0.6 -0.2 -0.1 +0.5 +0.1
carbon source Ying_sugar7 rep B; time point 1 -0.5 -0.1 -0.1 +0.6 -0.2
vitamin With vitamins t1 +0.4 +0.1 +0.2 -0.7 -0.2
nitrogen source Cytosine (N) +0.2 +0.2 +0.4 -0.4 -0.4
stress Chloride 0.5 M -0.2 -0.3 +0.4 +0.5 -0.1
carbon source Ying_Others16 rep C; time point 1 -0.4 +0.1 -0.2 +0.6 +0.4
motility outer cut, LB soft agar motility assay -0.5 +0.3 +0.4 +0.3 +0.0
stress RCH2 defined with Cobalt chloride 0.04 mM -0.3 +0.3 -0.0 +0.7 +0.1
carbon source Ying_Others16 rep A; time point 2 +0.2 +0.1 +0.1 +0.9 +0.3
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