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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf6N2E2_5420 and Pf6N2E2_5421 are separated by 530 nucleotides
Pf6N2E2_5421 and Pf6N2E2_5422 overlap by 8 nucleotides
Pf6N2E2_5422 and Pf6N2E2_5423 are separated by 246 nucleotides
Pf6N2E2_5423 and Pf6N2E2_5424 are separated by 5 nucleotides
Pf6N2E2_5420 - Cytosol aminopeptidase PepA (EC 3.4.11.1), at 6,224,414 to 6,225,904
_5420
Pf6N2E2_5421 - FIG000988: Predicted permease, at 6,226,435 to 6,227,556
_5421
Pf6N2E2_5422 - FIG000906: Predicted Permease, at 6,227,549 to 6,228,610
_5422
Pf6N2E2_5423 - Translation elongation factor LepA, at 6,228,857 to 6,230,656
_5423
Pf6N2E2_5424 - Signal peptidase I (EC 3.4.21.89), at 6,230,662 to 6,231,516
_5424
Group
Condition
Pf6N2E2
_5420
Pf6N2E2
_5421
Pf6N2E2
_5422
Pf6N2E2
_5423
Pf6N2E2
_5424
carbon source
Ying_Others16 rep B; time point 3
-1.7
N.D.
N.D.
N.D.
N.D.
stress
Bile salts 0.0125 M
-1.7
N.D.
N.D.
N.D.
N.D.
stress
Choline Lysine 20 mM
-1.5
N.D.
N.D.
N.D.
N.D.
nitrogen source
L-Isoleucine (N)
-1.5
N.D.
N.D.
N.D.
N.D.
carbon source
Ying_Others16 rep A; time point 3
-1.4
N.D.
N.D.
N.D.
N.D.
stress
deoxycholate 0.0125 M
-1.3
N.D.
N.D.
N.D.
N.D.
nitrogen source
L-Isoleucine (N)
-1.3
N.D.
N.D.
N.D.
N.D.
carbon source
Ying_Others16 rep C; time point 3
-1.2
N.D.
N.D.
N.D.
N.D.
stress
copper (II) chloride 3 mM
-1.2
N.D.
N.D.
N.D.
N.D.
stress
RCH2 defined with copper (II) chloride 0.03 mM
+1.1
N.D.
N.D.
N.D.
N.D.
carbon source
m-Inositol (C)
+1.1
N.D.
N.D.
N.D.
N.D.
carbon source
D-Galactose (C)
+1.2
N.D.
N.D.
N.D.
N.D.
stress
Cobalt chloride 0.4 mM
+1.2
N.D.
N.D.
N.D.
N.D.
stress
Cobalt chloride 0.4 mM
+1.2
N.D.
N.D.
N.D.
N.D.
stress
Cobalt chloride 0.4 mM
+1.3
N.D.
N.D.
N.D.
N.D.
stress
Cobalt chloride 0.4 mM
+1.3
N.D.
N.D.
N.D.
N.D.
stress
RCH2 defined with Nickel (II) chloride 0.04 mM
+1.5
N.D.
N.D.
N.D.
N.D.
carbon source
Trisodium citrate (C)
+1.6
N.D.
N.D.
N.D.
N.D.
stress
RCH2 defined with Nickel (II) chloride 0.04 mM
+1.6
N.D.
N.D.
N.D.
N.D.
carbon source
D-Galactose (C)
+1.8
N.D.
N.D.
N.D.
N.D.
stress
Cobalt chloride 0.16 mM
+1.9
N.D.
N.D.
N.D.
N.D.
carbon source
L-Histidine (C)
+2.0
N.D.
N.D.
N.D.
N.D.
stress
Cobalt chloride 0.6 mM
+2.0
N.D.
N.D.
N.D.
N.D.
stress
Cobalt chloride 0.6 mM
+2.2
N.D.
N.D.
N.D.
N.D.
carbon source
L-Histidine (C)
+2.2
N.D.
N.D.
N.D.
N.D.
stress
Cobalt chloride 0.6 mM
+2.4
N.D.
N.D.
N.D.
N.D.
stress
Cobalt chloride 0.6 mM
+2.4
N.D.
N.D.
N.D.
N.D.
carbon source
Trisodium citrate (C)
+2.9
N.D.
N.D.
N.D.
N.D.
stress
RCH2 defined with Cobalt chloride 0.04 mM
+5.9
N.D.
N.D.
N.D.
N.D.
stress
RCH2 defined with Cobalt chloride 0.04 mM
+6.2
N.D.
N.D.
N.D.
N.D.
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Pf6N2E2_5422
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