Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E2

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500 ntPf6N2E2_5399 and Pf6N2E2_5400 are separated by 137 nucleotidesPf6N2E2_5400 and Pf6N2E2_5401 are separated by 99 nucleotidesPf6N2E2_5401 and Pf6N2E2_5402 are separated by 473 nucleotidesPf6N2E2_5402 and Pf6N2E2_5403 are separated by 119 nucleotides Pf6N2E2_5399 - Ornithine cyclodeaminase (EC 4.3.1.12), at 6,203,894 to 6,204,661 _5399 Pf6N2E2_5400 - ATP-dependent RNA helicase RhlB, at 6,204,799 to 6,206,274 _5400 Pf6N2E2_5401 - phospholipase/carboxylesterase family protein, at 6,206,374 to 6,207,030 _5401 Pf6N2E2_5402 - ABC transporter for D-Alanine, periplasmic substrate-binding component (from data), at 6,207,504 to 6,208,535 _5402 Pf6N2E2_5403 - ABC transporter for D-Alanine, permease component 2 (from data), at 6,208,655 to 6,209,782 _5403
Group Condition Pf6N2E2_5399 Pf6N2E2_5400 Pf6N2E2_5401 Pf6N2E2_5402 Pf6N2E2_5403
carbon source D-Alanine (C) -0.1 +0.3 -1.4 -3.1 -3.7
carbon source D-Alanine (C) +0.1 -0.0 -1.2 -1.8 -2.3
carbon source L-Histidine (C) -0.2 +0.0 -1.1 -1.5 -1.8
nitrogen source L-Histidine (N) -0.1 +0.0 -0.4 -1.9 -2.0
carbon source L-Histidine (C) -0.1 -0.0 -0.7 -1.4 -1.9
carbon source Ying_OrganicAcid7 rep B; time point 3 -0.2 -0.1 -1.0 -1.3 -1.3
nitrogen source L-Histidine (N) +0.2 -0.1 -0.4 -1.8 -1.8
carbon source Ying_OrganicAcid7 rep C; time point 3 -0.1 +0.0 -1.1 -1.3 -1.2
carbon source Ying_OrganicAcid7 rep A; time point 3 -0.3 +0.0 -1.3 -1.1 -1.0
carbon source L-Glutamine (C) -0.2 +0.1 -0.5 -0.8 -0.9
stress RCH2 defined with Cobalt chloride 0.04 mM -0.3 +0.2 -0.2 -0.5 -1.3
carbon source L-Asparagine (C) +0.1 +0.1 -0.3 -0.9 -1.0
carbon source L-Alanine (C) -0.1 +0.2 -0.3 -0.6 -1.1
carbon source Ying_Others16 rep A; time point 3 -0.4 -0.4 -0.6 -0.2 -0.1
stress RCH2 defined with Cobalt chloride 0.04 mM -0.2 +0.4 +0.2 -0.6 -1.5
nitrogen source L-Proline (N) -0.1 -0.2 -0.5 -1.3 +0.3
carbon source Ying_Nucleobase14 rep B; time point 3 -0.3 +0.1 -0.4 -0.7 -0.2
carbon source L-Alanine (C) +0.2 +0.2 -0.3 -0.7 -0.9
nitrogen source L-Proline (N) +0.1 -0.2 -0.4 -1.1 +0.1
carbon source L-Leucine (C) -0.2 +0.3 -0.2 -0.6 -0.5
carbon source L-Leucine (C) -0.1 +0.3 -0.2 -0.7 -0.4
stress Doxycycline hyclate 0.0001 mg/ml -0.1 +0.5 +0.3 -1.1 +0.3
nitrogen source Glycine (N) +0.0 -0.3 +0.2 +0.7 +0.8
nitrogen source L-Serine (N) +0.2 -0.2 -0.4 +1.1 +0.9
nitrogen source L-Isoleucine (N) +0.2 -0.4 +0.0 +0.5 +1.4
resistance 50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine -0.1 +0.1 -0.1 +0.8 +1.2
resistance 10% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine +0.1 +0.1 -0.1 +0.9 +1.1
nitrogen source L-Isoleucine (N) -0.0 -0.1 -0.0 +1.2 +1.6
nitrogen source L-Serine (N) +0.4 -0.1 +0.0 +1.7 +2.0
resistance 50% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine -0.1 +0.1 +0.1 +2.8 +2.6
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Pf6N2E2_5399
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Pf6N2E2_5400
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Pf6N2E2_5402
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