Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E2

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500 ntPf6N2E2_5327 and Pf6N2E2_5328 are separated by 292 nucleotidesPf6N2E2_5328 and Pf6N2E2_5329 are separated by 141 nucleotidesPf6N2E2_5329 and Pf6N2E2_5330 are separated by 24 nucleotidesPf6N2E2_5330 and Pf6N2E2_5331 are separated by 101 nucleotides Pf6N2E2_5327 - Outer membrane protein assembly factor YaeT precursor, at 6,122,341 to 6,123,078 _5327 Pf6N2E2_5328 - FIG00958649: hypothetical protein, at 6,123,371 to 6,123,805 _5328 Pf6N2E2_5329 - Alpha/beta hydrolase, at 6,123,947 to 6,124,582 _5329 Pf6N2E2_5330 - Tryptophanyl-tRNA synthetase (EC 6.1.1.2), at 6,124,607 to 6,125,962 _5330 Pf6N2E2_5331 - ATPase, AFG1 family, at 6,126,064 to 6,127,158 _5331
Group Condition Pf6N2E2_5327 Pf6N2E2_5328 Pf6N2E2_5329 Pf6N2E2_5330 Pf6N2E2_5331
nitrogen source L-Isoleucine (N) -0.5 -3.3 +0.4 N.D. -2.4
carbon source octanoate (C) -0.1 -5.6 +0.4 N.D. -0.2
stress Magnesium chloride 0.125 M -1.2 -2.2 -0.3 N.D. -0.5
stress Hydroxylamine 0.5 M +0.9 -2.1 +0.0 N.D. -2.8
motility outer cut, LB soft agar motility assay -0.3 -0.2 -0.1 N.D. -3.3
nitrogen source L-Isoleucine (N) -0.2 -2.6 +1.0 N.D. -1.7
nitrogen source nitrogen source nitrate 5mM -0.4 -0.9 -0.8 N.D. -1.3
stress Zinc chloride 0.0000015625 M +0.1 -4.2 +0.6 N.D. +0.1
stress RCH2 defined with copper (II) chloride 0.03 mM -0.0 -3.2 +0.2 N.D. -0.3
carbon source Trisodium citrate (C) -0.3 +0.2 -0.7 N.D. -2.4
stress thiosulfate 0.25 M +0.1 -2.8 +0.1 N.D. -0.4
stress DEANONOate 0.000625 M +0.3 -0.3 -0.0 N.D. -3.0
carbon source octanoate (C) -0.2 -4.0 +0.9 N.D. +0.4
stress 5-Hydroxymethylfurfural 10 mM +0.4 -0.5 +0.2 N.D. -2.9
stress L-Lysine 25 mM -0.1 -3.0 +0.1 N.D. +0.3
stress Cobalt chloride 0.6 mM -0.1 -2.0 +0.9 N.D. -1.3
denitrifying Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate B +0.1 -2.7 +0.5 N.D. +0.1
carbon source Ying_Nucleobase14 rep C; time point 3 -0.2 -2.5 +0.6 N.D. +0.4
motility inner cut, LB soft agar motility assay +0.3 +0.3 +0.5 N.D. -2.6
stress copper (II) chloride 3 mM +0.2 -2.9 +0.1 N.D. +1.4
carbon source L-Alanine (C) -0.3 -1.9 +0.8 N.D. +0.4
carbon source D-Alanine (C) -0.2 +0.5 +0.8 N.D. -2.0
stress Choline Lysine 20 mM +0.2 -2.6 +0.3 N.D. +1.5
stress RCH2 defined with Cobalt chloride 0.04 mM -0.1 +1.7 -0.1 N.D. -1.9
stress periodate 0.00125 M +0.2 -2.0 +0.1 N.D. +1.6
carbon source D-Fructose (C) -0.3 -2.0 +0.7 N.D. +2.2
carbon source m-Inositol (C) -0.3 -1.2 +0.3 N.D. +2.1
carbon source D-Galactose (C) +0.2 -2.5 +1.8 N.D. +3.4
carbon source D-Galactose (C) -0.0 -1.5 +1.5 N.D. +2.9
stress Rifampicin 0.003 mg/ml -0.3 +1.4 +0.1 N.D. +1.8
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