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Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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500 nt
Pf6N2E2_5317 and Pf6N2E2_5318 are separated by 3 nucleotides
Pf6N2E2_5318 and Pf6N2E2_5319 are separated by 3 nucleotides
Pf6N2E2_5319 and Pf6N2E2_5320 are separated by 0 nucleotides
Pf6N2E2_5320 and Pf6N2E2_5321 are separated by 11 nucleotides
Pf6N2E2_5317 - Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-), at 6,112,407 to 6,113,321
_5317
Pf6N2E2_5318 - Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-), at 6,113,325 to 6,115,355
_5318
Pf6N2E2_5319 - Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-), at 6,115,359 to 6,115,985
_5319
Pf6N2E2_5320 - Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-), at 6,115,986 to 6,116,321
_5320
Pf6N2E2_5321 - Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB, at 6,116,333 to 6,117,220
_5321
Group
Condition
Pf6N2E2
_5317
Pf6N2E2
_5318
Pf6N2E2
_5319
Pf6N2E2
_5320
Pf6N2E2
_5321
stress
DEANONOate 0.000625 M
-5.1
-4.2
-5.1
-5.4
-4.7
stress
DEANONOate 0.000625 M
-3.9
-4.5
-4.9
-5.4
-5.4
stress
nitrite 10 mM
-3.0
-3.6
-3.9
-5.1
-3.4
stress
Gjerstad humics 0.5 M
-3.0
-3.6
-4.4
-3.7
-3.9
stress
4-Hydroxyacetophenone 0.00025 M
-2.6
-3.0
-3.3
-3.7
-3.6
stress
Gjerstad humics 0.5 M
-2.5
-3.5
-2.9
-3.6
-3.2
stress
4-Hydroxyacetophenone 0.00025 M
-2.1
-2.8
-3.3
-2.8
-3.4
stress
copper (II) chloride 3 mM
-2.0
-2.3
-2.9
-2.7
-3.1
stress
dimethyl sulfone 0.25 M
-1.6
-2.3
-2.5
-2.3
-3.1
stress
dimethyl sulfone 0.25 M
-1.0
-2.0
-2.3
-3.0
-2.1
stress
Hydrochloric Acid 0.005 M
-1.5
-1.8
-2.3
-1.4
-1.5
nitrogen source
nitrogen source nitrite 5mM
-2.3
-1.5
-2.2
-1.7
-0.6
stress
Fluorophosphate 0.125 M
-1.2
-1.3
-1.7
-2.2
-2.0
nitrogen source
nitrogen source nitrite 5mM
-2.3
-1.8
-1.4
-2.0
-0.8
stress
Cobalt chloride 0.4 mM
-1.5
-1.5
-1.7
-1.8
-1.5
stress
antimonate 0.005 M
-1.1
-1.7
-2.3
-1.8
-1.0
stress
5-Hydroxymethylfurfural 10 mM
-1.5
-1.5
-1.4
-1.7
-1.7
stress
Cobalt chloride 0.4 mM
-1.2
-1.4
-2.1
-1.7
-1.4
stress
antimonate 0.005 M
-1.4
-1.6
-1.7
-1.9
-1.2
stress
Cobalt chloride 0.4 mM
-1.5
-1.5
-1.7
-1.5
-1.5
stress
Fluorophosphate 0.125 M
-1.4
-1.3
-1.2
-1.9
-1.8
stress
Cobalt chloride 0.4 mM
-1.4
-1.3
-1.8
-1.2
-1.7
nitrogen source
L-Aspartic Acid (N)
-1.2
-0.9
-1.3
-1.7
-1.4
carbon source
octanoate (C)
+1.4
+1.3
+1.4
+1.2
+1.0
stress
Sisomicin 0.0016 mg/ml
+1.3
+1.4
+1.2
+1.2
+1.2
stress
chromate 0.0000015625 M
+1.0
+1.4
+1.5
+1.4
+1.5
stress
RCH2 defined with Cobalt chloride 0.04 mM
+1.3
+1.4
+1.0
+1.4
+1.8
stress
RCH2 defined with Cobalt chloride 0.04 mM
+1.6
+1.4
+1.5
+1.2
+1.3
stress
Phosphomycin 0.004 mg/ml
+1.6
+1.6
+1.6
+1.4
+1.5
stress
Hydroxylamine 0.5 M
+3.0
+2.4
+2.2
+2.4
+2.4
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