Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E2

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500 ntPf6N2E2_5305 and Pf6N2E2_5306 are separated by 109 nucleotidesPf6N2E2_5306 and Pf6N2E2_5307 overlap by 4 nucleotidesPf6N2E2_5307 and Pf6N2E2_5308 are separated by 129 nucleotidesPf6N2E2_5308 and Pf6N2E2_5309 are separated by 136 nucleotides Pf6N2E2_5305 - Fe(3+) dicitrate transport protein FecA (from data), at 6,098,258 to 6,100,597 _5305 Pf6N2E2_5306 - Iron siderophore sensor protein, at 6,100,707 to 6,101,666 _5306 Pf6N2E2_5307 - FIG006045: Sigma factor, ECF subfamily, at 6,101,663 to 6,102,151 _5307 Pf6N2E2_5308 - Transcriptional regulator, AraC family, at 6,102,281 to 6,103,156 _5308 Pf6N2E2_5309 - Permease of the drug/metabolite transporter (DMT) superfamily, at 6,103,293 to 6,104,195 _5309
Group Condition Pf6N2E2_5305 Pf6N2E2_5306 Pf6N2E2_5307 Pf6N2E2_5308 Pf6N2E2_5309
nitrogen source nitrogen source nitrite 5mM -0.0 +0.2 +0.1 -2.9 -7.3
nitrogen source nitrogen source nitrite 5mM +0.2 +0.1 -0.1 -2.9 -6.2
denitrifying Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A +0.1 +0.4 +0.8 -3.0 -4.6
denitrifying Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate B +0.1 +0.1 +0.4 -2.7 -4.2
denitrifying Nitrate reduction, replicate A +0.1 -0.0 +0.2 -3.1 -3.3
denitrifying Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate A +0.0 +0.0 +0.1 -2.8 -3.5
denitrifying Nitrate reduction, replicate B -0.0 +0.0 +0.7 -3.0 -3.6
denitrifying Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate B +0.0 +0.1 +0.5 -2.3 -4.0
denitrifying Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate C +0.1 +0.0 +0.4 -2.7 -3.4
carbon source Trisodium citrate (C) -2.2 -1.0 -2.2 -0.1 -0.2
carbon source Trisodium citrate (C) -1.8 -0.9 -1.8 +0.1 -0.0
denitrifying Nitrate reduction, replicate C -0.1 +0.1 +0.3 -1.4 -2.0
stress Hydroxylamine 0.5 M -0.1 -0.1 -1.8 -0.0 +0.2
carbon source Ying_sugar7 rep B; time point 1 +0.1 -0.6 -0.2 -0.2 -0.8
carbon source Ying_OrganicAcid7 rep C; time point 2 -0.1 -0.6 -0.6 -0.1 -0.2
carbon source Ying_AminoAcid20 rep B; time point 2 +0.1 -0.8 +0.1 -0.1 -0.8
stress Cobalt chloride 0.6 mM -0.3 +0.1 -1.0 -0.1 -0.2
stress tungstate 0.05 M -0.2 -0.3 -0.3 +0.0 -0.5
stress Cobalt chloride 0.6 mM -0.2 -0.3 -0.4 -0.3 +0.1
stress Cobalt chloride 0.6 mM -0.3 -0.0 -0.6 +0.1 -0.3
stress Chloride 600 mM -0.2 -0.6 -0.7 +0.1 +0.3
stress antimonate 0.005 M -0.1 +0.1 -0.5 -0.3 -0.4
carbon source Ying_AminoAcid20 rep A; time point 3 +0.1 -0.3 +0.1 +0.2 -0.7
stress Bile salts 0.0125 M +0.1 +0.1 -0.8 -0.1 +0.3
stress RCH2 defined with copper (II) chloride 0.03 mM +0.0 -0.2 +0.5 -0.1 -0.6
denitrifying Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate C -0.1 +0.0 +0.7 -0.4 -0.7
stress RCH2 defined with Cobalt chloride 0.04 mM -0.0 -0.2 +0.6 -0.0 -0.7
stress DEANONOate 0.000625 M +0.3 +0.2 +0.2 -0.5 -0.4
carbon source Ying_Others16 rep A; time point 1 -0.1 -0.3 +0.2 -0.3 +0.5
nitrogen source L-Serine (N) +0.1 -0.3 +0.9 +0.0 -0.2
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