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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf6N2E2_5305 and Pf6N2E2_5306 are separated by 109 nucleotides
Pf6N2E2_5306 and Pf6N2E2_5307 overlap by 4 nucleotides
Pf6N2E2_5307 and Pf6N2E2_5308 are separated by 129 nucleotides
Pf6N2E2_5308 and Pf6N2E2_5309 are separated by 136 nucleotides
Pf6N2E2_5305 - Fe(3+) dicitrate transport protein FecA
(from data)
, at 6,098,258 to 6,100,597
_5305
Pf6N2E2_5306 - Iron siderophore sensor protein, at 6,100,707 to 6,101,666
_5306
Pf6N2E2_5307 - FIG006045: Sigma factor, ECF subfamily, at 6,101,663 to 6,102,151
_5307
Pf6N2E2_5308 - Transcriptional regulator, AraC family, at 6,102,281 to 6,103,156
_5308
Pf6N2E2_5309 - Permease of the drug/metabolite transporter (DMT) superfamily, at 6,103,293 to 6,104,195
_5309
Group
Condition
Pf6N2E2
_5305
Pf6N2E2
_5306
Pf6N2E2
_5307
Pf6N2E2
_5308
Pf6N2E2
_5309
nitrogen source
nitrogen source nitrite 5mM
-0.0
+0.2
+0.1
-2.9
-7.3
nitrogen source
nitrogen source nitrite 5mM
+0.2
+0.1
-0.1
-2.9
-6.2
denitrifying
Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A
+0.1
+0.4
+0.8
-3.0
-4.6
denitrifying
Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate B
+0.1
+0.1
+0.4
-2.7
-4.2
denitrifying
Nitrate reduction, replicate A
+0.1
-0.0
+0.2
-3.1
-3.3
denitrifying
Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate A
+0.0
+0.0
+0.1
-2.8
-3.5
denitrifying
Nitrate reduction, replicate B
-0.0
+0.0
+0.7
-3.0
-3.6
denitrifying
Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate B
+0.0
+0.1
+0.5
-2.3
-4.0
denitrifying
Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate C
+0.1
+0.0
+0.4
-2.7
-3.4
carbon source
Trisodium citrate (C)
-2.2
-1.0
-2.2
-0.1
-0.2
carbon source
Trisodium citrate (C)
-1.8
-0.9
-1.8
+0.1
-0.0
denitrifying
Nitrate reduction, replicate C
-0.1
+0.1
+0.3
-1.4
-2.0
stress
Hydroxylamine 0.5 M
-0.1
-0.1
-1.8
-0.0
+0.2
carbon source
Ying_sugar7 rep B; time point 1
+0.1
-0.6
-0.2
-0.2
-0.8
carbon source
Ying_OrganicAcid7 rep C; time point 2
-0.1
-0.6
-0.6
-0.1
-0.2
carbon source
Ying_AminoAcid20 rep B; time point 2
+0.1
-0.8
+0.1
-0.1
-0.8
stress
Cobalt chloride 0.6 mM
-0.3
+0.1
-1.0
-0.1
-0.2
stress
tungstate 0.05 M
-0.2
-0.3
-0.3
+0.0
-0.5
stress
Cobalt chloride 0.6 mM
-0.2
-0.3
-0.4
-0.3
+0.1
stress
Cobalt chloride 0.6 mM
-0.3
-0.0
-0.6
+0.1
-0.3
stress
Chloride 600 mM
-0.2
-0.6
-0.7
+0.1
+0.3
stress
antimonate 0.005 M
-0.1
+0.1
-0.5
-0.3
-0.4
carbon source
Ying_AminoAcid20 rep A; time point 3
+0.1
-0.3
+0.1
+0.2
-0.7
stress
Bile salts 0.0125 M
+0.1
+0.1
-0.8
-0.1
+0.3
stress
RCH2 defined with copper (II) chloride 0.03 mM
+0.0
-0.2
+0.5
-0.1
-0.6
denitrifying
Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate C
-0.1
+0.0
+0.7
-0.4
-0.7
stress
RCH2 defined with Cobalt chloride 0.04 mM
-0.0
-0.2
+0.6
-0.0
-0.7
stress
DEANONOate 0.000625 M
+0.3
+0.2
+0.2
-0.5
-0.4
carbon source
Ying_Others16 rep A; time point 1
-0.1
-0.3
+0.2
-0.3
+0.5
nitrogen source
L-Serine (N)
+0.1
-0.3
+0.9
+0.0
-0.2
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