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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf6N2E2_5244 and Pf6N2E2_5245 are separated by 205 nucleotides
Pf6N2E2_5245 and Pf6N2E2_5246 are separated by 63 nucleotides
Pf6N2E2_5246 and Pf6N2E2_5247 are separated by 257 nucleotides
Pf6N2E2_5247 and Pf6N2E2_5248 overlap by 12 nucleotides
Pf6N2E2_5244 - FIG00954931: hypothetical protein, at 6,041,125 to 6,041,358
_5244
Pf6N2E2_5245 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 6,041,564 to 6,042,148
_5245
Pf6N2E2_5246 - FIG00955938: hypothetical protein, at 6,042,212 to 6,042,418
_5246
Pf6N2E2_5247 - hypothetical protein, at 6,042,676 to 6,042,792
_5247
Pf6N2E2_5248 - FIG00955916: hypothetical protein, at 6,042,781 to 6,043,062
_5248
Group
Condition
Pf6N2E2
_5244
Pf6N2E2
_5245
Pf6N2E2
_5246
Pf6N2E2
_5247
Pf6N2E2
_5248
motility
inner cut, LB soft agar motility assay
N.D.
-3.7
-0.3
N.D.
N.D.
stress
molybdate 0.25 M
N.D.
-3.8
-0.2
N.D.
N.D.
stress
Choline Lysine 20 mM
N.D.
-3.6
-0.1
N.D.
N.D.
stress
Hydroxylamine 0.5 M
N.D.
-2.5
-1.0
N.D.
N.D.
stress
deoxycholate 0.0125 M
N.D.
-3.3
-0.0
N.D.
N.D.
motility
outer cut, LB soft agar motility assay
N.D.
-3.3
-0.1
N.D.
N.D.
stress
molybdate 0.25 M
N.D.
-3.4
+0.1
N.D.
N.D.
stress
dimethyl sulfone 0.25 M
N.D.
-3.0
-0.2
N.D.
N.D.
stress
selenate 0.5 M
N.D.
-2.6
-0.6
N.D.
N.D.
stress
thiosulfate 0.25 M
N.D.
-3.3
+0.2
N.D.
N.D.
stress
Bile salts 0.0125 M
N.D.
-3.2
+0.2
N.D.
N.D.
stress
L-Lysine 25 mM
N.D.
-2.9
-0.1
N.D.
N.D.
stress
Magnesium chloride 0.125 M
N.D.
-2.5
-0.5
N.D.
N.D.
stress
thiosulfate 0.25 M
N.D.
-3.1
+0.2
N.D.
N.D.
stress
Magnesium chloride 0.125 M
N.D.
-2.3
-0.4
N.D.
N.D.
stress
tungstate 0.05 M
N.D.
-2.6
-0.0
N.D.
N.D.
nitrogen source
L-Serine (N)
N.D.
-1.3
-1.1
N.D.
N.D.
stress
selenate 0.5 M
N.D.
-2.1
-0.1
N.D.
N.D.
stress
Nickel (II) chloride 0.0025 M
N.D.
-1.5
-0.6
N.D.
N.D.
stress
Cisplatin 0.008 mg/ml
N.D.
-1.9
-0.1
N.D.
N.D.
stress
Vanillyl Alcohol 0.005 M
N.D.
-1.9
-0.0
N.D.
N.D.
stress
dimethyl sulfone 0.25 M
N.D.
-2.0
+0.0
N.D.
N.D.
motility
inner cut, LB soft agar motility assay
N.D.
-1.8
-0.1
N.D.
N.D.
stress
Nickel (II) chloride 0.0025 M
N.D.
-1.7
+0.1
N.D.
N.D.
stress
RCH2 defined with Cobalt chloride 0.04 mM
N.D.
-0.7
-1.0
N.D.
N.D.
stress
Vanillyl Alcohol 0.005 M
N.D.
-1.7
+0.1
N.D.
N.D.
stress
Rifampicin 0.003 mg/ml
N.D.
-1.5
+0.2
N.D.
N.D.
stress
sodium iodate 0.005 M
N.D.
-1.8
+0.6
N.D.
N.D.
stress
sodium iodate 0.005 M
N.D.
-1.5
+0.3
N.D.
N.D.
stress
tungstate 0.05 M
N.D.
-1.3
+0.4
N.D.
N.D.
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