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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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500 nt
Pf6N2E2_5168 and Pf6N2E2_5169 are separated by 233 nucleotides
Pf6N2E2_5169 and Pf6N2E2_5170 are separated by 87 nucleotides
Pf6N2E2_5170 and Pf6N2E2_5171 are separated by 220 nucleotides
Pf6N2E2_5171 and Pf6N2E2_5172 are separated by 16 nucleotides
Pf6N2E2_5168 - Regulator of competence-specific genes, at 5,956,443 to 5,956,715
_5168
Pf6N2E2_5169 - FIG00954216: hypothetical protein, at 5,956,949 to 5,957,290
_5169
Pf6N2E2_5170 - FIG00955330: hypothetical protein, at 5,957,378 to 5,958,934
_5170
Pf6N2E2_5171 - Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-), at 5,959,155 to 5,961,371
_5171
Pf6N2E2_5172 - FOG: TPR repeat, at 5,961,388 to 5,962,107
_5172
Group
Condition
Pf6N2E2
_5168
Pf6N2E2
_5169
Pf6N2E2
_5170
Pf6N2E2
_5171
Pf6N2E2
_5172
stress
Phosphomycin 0.004 mg/ml
-0.6
-0.5
-0.3
-5.1
-5.3
stress
deoxycholate 0.0125 M
-0.3
-0.9
-0.6
-0.5
-3.0
stress
Magnesium chloride 0.125 M
-0.1
-0.3
+0.1
-2.6
-1.4
nitrogen source
nitrogen source nitrate 20mM
-0.1
-0.2
-1.3
-0.4
-2.3
stress
Choline Lysine 20 mM
-0.3
+0.2
-0.1
-0.7
-3.4
motility
inner cut, LB soft agar motility assay
-0.1
-0.2
-1.4
-0.8
-1.5
nitrogen source
nitrogen source nitrite 1mM
+0.0
-0.3
-1.9
-0.5
-0.8
stress
thiosulfate 0.25 M
+0.4
-0.6
-0.3
-0.9
-2.2
nitrogen source
nitrogen source Ammonium chloride 20mM
+0.2
+0.2
-1.6
-0.6
-1.5
nitrogen source
nitrogen source nitrite 0.5mM
+0.4
-0.4
-1.7
-0.5
-1.1
stress
thiosulfate 0.25 M
-0.0
-0.1
-0.2
-1.1
-1.9
nitrogen source
nitrogen source nitrite 1mM
+0.3
-0.4
-1.5
-0.6
-1.1
stress
molybdate 0.25 M
-0.2
-0.4
+0.1
-0.7
-1.9
stress
Chloride 600 mM
+0.0
+0.4
-0.9
-1.3
-1.3
stress
Calcium chloride 0.0125 M
-0.3
+0.4
-1.1
-1.6
-0.6
stress
molybdate 0.25 M
-0.1
-0.1
+0.1
-0.8
-2.2
nitrogen source
nitrogen source nitrite 5mM
+0.4
-0.0
-1.8
-0.4
-0.8
stress
Cisplatin 0.008 mg/ml
+0.3
+0.1
-0.3
-0.7
-1.9
stress
Calcium chloride 0.0125 M
+0.1
+0.3
-1.1
-1.9
+0.2
nitrogen source
nitrogen source nitrate 5mM
+0.4
+0.5
-1.6
-0.5
-1.1
nitrogen source
nitrogen source Ammonium chloride 20mM
-0.6
-0.3
-1.5
-0.5
+0.6
nitrogen source
nitrogen source nitrite 5mM
+0.1
-0.3
-2.0
-0.6
+0.5
stress
RCH2 defined with copper (II) chloride 0.03 mM
+0.6
+0.7
-0.2
-0.6
-2.5
stress
dimethyl sulfone 0.25 M
+0.6
+0.4
-0.0
+0.0
-2.8
stress
Zinc chloride 0.0000015625 M
-0.2
+0.7
+0.2
-0.4
-2.0
stress
rubidium chloride 0.25 M
+0.3
+0.3
-0.0
-1.5
-0.9
stress
Lomefloxacin 0.0002 mM
+0.2
+0.1
+0.6
-2.4
+0.5
stress
Hydroxylamine 0.5 M
+0.4
+0.1
+1.3
-0.4
-2.5
carbon source
D-Galactose (C)
+0.0
-0.0
+1.7
-0.6
-1.0
carbon source
D-Galactose (C)
+0.1
+0.3
+1.8
-0.6
-0.4
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