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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf6N2E2_5160 and Pf6N2E2_5161 are separated by 432 nucleotides
Pf6N2E2_5161 and Pf6N2E2_5162 overlap by 1 nucleotides
Pf6N2E2_5162 and Pf6N2E2_5163 overlap by 45 nucleotides
Pf6N2E2_5163 and Pf6N2E2_5164 are separated by 191 nucleotides
Pf6N2E2_5160 - C4-type zinc finger protein, DksA/TraR family, at 5,949,491 to 5,949,853
_5160
Pf6N2E2_5161 - Valine--pyruvate aminotransferase (EC 2.6.1.66) ## AvtA, at 5,950,286 to 5,951,458
_5161
Pf6N2E2_5162 - Sugar/maltose fermentation stimulation protein homolog, at 5,951,458 to 5,952,204
_5162
Pf6N2E2_5163 - Iron-sulfur cluster-binding protein, Rieske family, at 5,952,160 to 5,952,477
_5163
Pf6N2E2_5164 - Periplasmic hemin-binding protein, at 5,952,669 to 5,953,547
_5164
Group
Condition
Pf6N2E2
_5160
Pf6N2E2
_5161
Pf6N2E2
_5162
Pf6N2E2
_5163
Pf6N2E2
_5164
motility
inner cut, LB soft agar motility assay
-4.6
-0.0
-0.0
+0.1
-0.1
carbon source
Carnitine Hydrochloride (C)
-4.4
+0.0
+0.0
-0.2
-0.1
motility
inner cut, LB soft agar motility assay
-4.2
-0.0
-0.0
-0.1
+0.1
carbon source
L-Isoleucine (C)
-4.4
+0.2
-0.1
-0.2
+0.2
carbon source
L-Histidine (C)
-4.3
+0.1
-0.1
+0.1
+0.0
carbon source
propionate (C)
-4.0
+0.0
+0.2
+0.2
-0.5
carbon source
L-Isoleucine (C)
-3.9
+0.1
+0.0
-0.1
-0.0
nitrogen source
L-Lysine (N)
-3.8
+0.0
-0.1
+0.3
-0.4
carbon source
Carnitine Hydrochloride (C)
-4.0
+0.0
-0.1
+0.0
+0.1
carbon source
Putrescine (C)
-4.4
+0.1
+0.1
-0.1
+0.3
carbon source
Putrescine (C)
-4.1
+0.1
-0.0
-0.0
+0.1
nitrogen source
L-Isoleucine (N)
-4.1
-0.1
-0.0
+0.2
+0.1
stress
thiosulfate 0.25 M
-3.5
-0.2
+0.1
-0.2
-0.0
stress
copper (II) chloride 3 mM
-3.5
+0.1
-0.2
-0.5
+0.3
nitrogen source
L-Isoleucine (N)
-3.9
-0.0
+0.1
-0.2
+0.2
carbon source
L-Alanine (C)
-3.9
+0.1
-0.1
+0.2
+0.0
carbon source
L-Alanine (C)
-4.3
+0.3
+0.2
+0.1
+0.1
stress
arsenate 0.0005 M
-3.8
+0.1
+0.1
-0.1
+0.0
stress
Hydroxylamine 0.5 M
-3.8
-0.0
+0.1
+0.1
-0.0
carbon source
propionate (C)
-4.3
+0.0
+0.0
+0.2
+0.5
nitrogen source
Glucuronamide (N)
-4.0
+0.1
+0.1
+0.0
+0.1
carbon source
D-Xylose (C)
-3.8
-0.1
+0.2
+0.1
+0.0
nitrogen source
nitrogen source nitrate 20mM
-3.6
+0.1
-0.3
+0.4
-0.1
nitrogen source
Glucuronamide (N)
-3.9
+0.1
-0.2
+0.1
+0.5
nitrogen source
Cytidine (N)
-3.6
-0.2
+0.1
+0.1
+0.1
nitrogen source
nitrogen source nitrite 1mM
-3.8
+0.2
-0.0
+0.1
+0.3
nitrogen source
nitrogen source nitrite 5mM
-3.7
+0.3
+0.1
+0.2
-0.1
carbon source
L-Leucine (C)
-3.3
+0.1
-0.2
+0.4
-0.1
motility
inner cut, LB soft agar motility assay
-4.0
+0.1
+0.3
+0.2
+0.2
nitrogen source
Uridine (N)
-3.7
+0.1
-0.0
+0.4
+0.4
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