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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf6N2E2_5094 and Pf6N2E2_5095 are separated by 132 nucleotides
Pf6N2E2_5095 and Pf6N2E2_5096 are separated by 204 nucleotides
Pf6N2E2_5096 and Pf6N2E2_5097 are separated by 134 nucleotides
Pf6N2E2_5097 and Pf6N2E2_5098 are separated by 206 nucleotides
Pf6N2E2_5094 - FIG00956889: hypothetical protein, at 5,878,672 to 5,878,923
_5094
Pf6N2E2_5095 - Putative inner membrane protein (Fragment), at 5,879,056 to 5,879,544
_5095
Pf6N2E2_5096 - FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8), at 5,879,749 to 5,880,366
_5096
Pf6N2E2_5097 - FIG00953595: hypothetical protein, at 5,880,501 to 5,880,758
_5097
Pf6N2E2_5098 - Alkylphosphonate utilization operon protein PhnA, at 5,880,965 to 5,881,306
_5098
Group
Condition
Pf6N2E2
_5094
Pf6N2E2
_5095
Pf6N2E2
_5096
Pf6N2E2
_5097
Pf6N2E2
_5098
carbon source
Ying_all64 rep A; time point 3
-0.5
-0.2
-0.4
-1.0
-0.5
carbon source
Ying_OrganicAcid7 rep C; time point 2
-0.5
-1.0
-0.2
-0.9
-0.0
carbon source
Ying_OrganicAcid7 rep B; time point 3
-0.2
+0.0
-0.6
-1.4
-0.3
carbon source
Ying_AminoAcid20 rep B; time point 3
+0.0
-0.5
-0.3
-1.4
-0.3
carbon source
Ying_OrganicAcid7 rep B; time point 2
-0.3
-1.3
-0.0
-1.2
+0.4
carbon source
Ying_OrganicAcid7 rep A; time point 3
+0.2
-0.5
-0.4
-1.1
-0.5
carbon source
Ying_AminoAcid20 rep C; time point 2
-0.3
-1.1
+0.3
-1.2
-0.0
carbon source
Ying_sugar7 rep B; time point 1
-0.2
-0.2
-0.4
-1.0
-0.4
carbon source
Ying_OrganicAcid7 rep C; time point 3
-0.0
-0.3
-0.2
-1.0
-0.7
carbon source
Ying_Nucleobase14 rep C; time point 2
-0.5
-0.8
+0.2
-1.1
-0.1
carbon source
Ying_Others16 rep C; time point 1
-0.2
-0.9
-0.2
-0.8
-0.2
carbon source
Ying_all64 rep C; time point 3
-0.3
-0.4
-0.1
-1.3
-0.1
carbon source
Ying_AminoAcid20 rep C; time point 3
-0.2
-0.4
-0.2
-1.3
-0.1
carbon source
Ying_AminoAcid20 rep A; time point 3
+0.2
-0.4
-0.7
-1.1
-0.1
carbon source
Ying_Others16 rep A; time point 1
-0.3
-0.6
-0.3
-1.0
+0.3
stress
RCH2 defined with Nickel (II) chloride 0.04 mM
-0.3
-0.6
-0.4
-0.9
+0.3
carbon source
Ying_Nucleobase14 rep B; time point 3
+0.1
-0.2
-0.2
-1.1
-0.6
stress
tungstate 0.05 M
+0.4
+0.2
-0.2
-2.1
+0.1
carbon source
Ying_all64 rep B; time point 3
+0.2
-0.2
-0.3
-1.3
+0.2
stress
Cobalt chloride 0.6 mM
-0.4
+0.6
-0.8
-0.2
-0.6
carbon source
Ying_Others16 rep A; time point 2
-0.2
-0.4
-0.1
-0.9
+0.5
vitamin
No vitamins t2
-0.4
+0.8
-0.2
-0.9
-0.2
carbon source
Ying_Nucleobase14 rep A; time point 2
+0.2
-0.5
+0.3
-1.1
+0.3
carbon source
Carbon source Sucrose 5 mM
-0.1
-0.5
+0.5
+0.5
-0.8
nitrogen source
Glucuronamide (N)
+0.3
-0.6
+0.3
+0.4
-0.6
motility
outer cut, LB soft agar motility assay
+0.4
-1.0
-0.7
+0.6
+0.7
stress
deoxycholate 0.0125 M
-0.7
+0.6
+0.2
-0.1
+0.6
stress
thiosulfate 0.25 M
+0.4
+0.3
-0.1
+1.0
-0.6
stress
RCH2 defined with Cobalt chloride 0.04 mM
-0.0
+1.5
-0.2
+0.2
+0.3
lb
LB
+0.6
+2.5
+0.0
+0.3
+0.2
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Pf6N2E2_5096
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