Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E2

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500 ntPf6N2E2_5052 and Pf6N2E2_5053 are separated by 70 nucleotidesPf6N2E2_5053 and Pf6N2E2_5054 are separated by 15 nucleotidesPf6N2E2_5054 and Pf6N2E2_5055 are separated by 252 nucleotidesPf6N2E2_5055 and Pf6N2E2_5056 are separated by 167 nucleotides Pf6N2E2_5052 - Hydrolase in polyol utilization gene cluster, haloacid dehalogenase-like family, at 5,827,020 to 5,827,613 _5052 Pf6N2E2_5053 - putative exported protein, at 5,827,684 to 5,828,616 _5053 Pf6N2E2_5054 - YpfJ protein, zinc metalloprotease superfamily, at 5,828,632 to 5,829,516 _5054 Pf6N2E2_5055 - membrane protein, putative, at 5,829,769 to 5,830,647 _5055 Pf6N2E2_5056 - Hexuronate transporter, at 5,830,815 to 5,832,152 _5056
Group Condition Pf6N2E2_5052 Pf6N2E2_5053 Pf6N2E2_5054 Pf6N2E2_5055 Pf6N2E2_5056
stress Fluorophosphate 0.125 M -1.6 -0.1 -0.2 -0.2 -0.2
carbon source D-Fructose (C) -1.3 +0.3 -0.4 -0.1 -0.4
stress Cadmium chloride hemipentahydrate 0.00005 M -1.4 -0.1 -0.2 +0.1 -0.2
stress Nalidixic 0.004 mg/ml -0.7 -0.2 -0.3 -0.2 -0.3
stress pyrophosphate 0.0025 M -1.5 -0.1 -0.0 +0.1 +0.0
carbon source Ying_AminoAcid20 rep B; time point 3 -1.5 +0.1 -0.1 +0.0 +0.0
carbon source Ying_OrganicAcid7 rep A; time point 3 -1.5 -0.0 +0.0 +0.1 +0.1
carbon source Ying_all64 rep C; time point 3 -1.4 +0.1 +0.1 -0.2 +0.1
carbon source Ying_Others16 rep B; time point 3 -1.2 +0.0 +0.1 +0.3 -0.4
carbon source Ying_all64 rep A; time point 3 -1.4 +0.0 +0.0 +0.1 +0.1
carbon source Ying_Nucleobase14 rep B; time point 3 -1.5 -0.1 +0.1 +0.2 +0.0
carbon source Ying_Others16 rep A; time point 3 -1.2 +0.2 -0.1 +0.4 -0.4
lb LB no stress 48 hours -1.3 +0.2 -0.3 +0.2 +0.1
carbon source Ying_AminoAcid20 rep A; time point 3 -1.5 +0.2 +0.1 -0.0 +0.1
carbon source Ying_all64 rep B; time point 3 -1.5 +0.1 +0.0 -0.0 +0.2
carbon source Ying_Others16 rep C; time point 3 -1.2 +0.1 -0.0 +0.5 -0.3
stress deoxycholate 0.0125 M -1.4 +0.1 +0.0 +0.4 -0.0
carbon source Ying_Nucleobase14 rep A; time point 3 -1.5 +0.1 +0.3 +0.1 +0.2
stress chromate 0.0000015625 M -0.9 -0.2 +0.1 +0.2 +0.1
carbon source Ying_Others16 rep A; time point 2 -0.3 +0.2 -0.4 +0.4 -0.4
motility outer cut, LB soft agar motility assay -0.3 +0.2 -0.7 +0.4 -0.1
stress periodate 0.00125 M -0.7 -0.2 +0.3 +0.8 -0.2
stress Fusidic 0.3 mg/ml +0.8 +0.0 -0.3 -0.3 +0.1
carbon source Ying_sugar7 rep B; time point 1 +1.1 +0.1 -0.3 -0.0 -0.3
motility outer cut, LB soft agar motility assay +0.7 -0.5 +0.1 +0.6 -0.2
carbon source Ying_AminoAcid20 rep A; time point 2 +1.6 -0.0 -0.3 +0.1 -0.2
nitrogen source L-Serine (N) +0.6 +0.3 +0.6 -0.4 +0.2
carbon source octanoate (C) +0.5 +0.1 +0.8 -0.1 +0.0
carbon source Ying_Others16 rep C; time point 2 +2.4 +0.3 +0.1 +0.4 -0.5
stress Zinc chloride 0.0000015625 M +1.8 +0.0 +0.6 +0.3 +0.5
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