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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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500 nt
Pf6N2E2_5013 and Pf6N2E2_5014 are separated by 168 nucleotides
Pf6N2E2_5014 and Pf6N2E2_5015 are separated by 27 nucleotides
Pf6N2E2_5015 and Pf6N2E2_5016 are separated by 40 nucleotides
Pf6N2E2_5016 and Pf6N2E2_5017 overlap by 8 nucleotides
Pf6N2E2_5013 - Putative membrane protein, at 5,779,651 to 5,780,412
_5013
Pf6N2E2_5014 - Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE, at 5,780,581 to 5,782,104
_5014
Pf6N2E2_5015 - Magnesium and cobalt efflux protein CorC, at 5,782,132 to 5,782,971
_5015
Pf6N2E2_5016 - Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly, at 5,783,012 to 5,783,470
_5016
Pf6N2E2_5017 - Phosphate starvation-inducible protein PhoH, predicted ATPase, at 5,783,463 to 5,784,473
_5017
Group
Condition
Pf6N2E2
_5013
Pf6N2E2
_5014
Pf6N2E2
_5015
Pf6N2E2
_5016
Pf6N2E2
_5017
nitrogen source
L-Serine (N)
-4.9
-3.7
-1.4
N.D.
-0.8
stress
DEANONOate 0.000625 M
-0.0
-5.4
-4.2
N.D.
-0.6
stress
DEANONOate 0.000625 M
-0.1
-5.2
-3.6
N.D.
-0.6
carbon source
octanoate (C)
-0.5
-5.3
-0.2
N.D.
-0.9
carbon source
Carbon source Sucrose 5 mM
-1.9
-4.0
-0.2
N.D.
-0.4
stress
sodium bromide 0.0125 M
-0.2
-5.3
-0.7
N.D.
-0.3
stress
Calcium chloride 0.0125 M
-0.4
-5.4
-0.4
N.D.
-0.0
stress
sodium bromide 0.0125 M
-0.1
-5.4
-0.5
N.D.
-0.3
stress
Aluminum chloride 4 mM
-0.4
-5.0
+0.2
N.D.
-0.9
stress
Cadmium chloride hemipentahydrate 0.000015625 M
-0.5
-5.3
+0.1
N.D.
-0.3
carbon source
Putrescine (C)
-0.6
-5.2
+0.5
N.D.
-0.4
carbon source
Carbon source Sucrose 5 mM
-1.5
-3.8
-0.6
N.D.
+0.2
stress
Hydroxylamine 0.5 M
+0.3
-4.3
-0.6
N.D.
-0.8
carbon source
octanoate (C)
-0.2
-5.1
+0.4
N.D.
-0.5
lb
LB
+0.4
-5.0
-0.3
N.D.
-0.2
stress
Cadmium chloride hemipentahydrate 0.000015625 M
+0.4
-5.2
+0.1
N.D.
-0.3
carbon source
L-Alanine (C)
-0.5
-5.0
+0.6
N.D.
+0.1
carbon source
Trisodium citrate (C)
-0.8
-4.6
+0.2
N.D.
+0.4
carbon source
L-Phenylalanine (C)
-0.0
-5.0
+0.7
N.D.
-0.2
stress
copper (II) chloride 3 mM
+0.9
-5.1
-0.4
N.D.
+0.3
carbon source
L-Isoleucine (C)
-0.1
-5.0
+0.9
N.D.
-0.0
carbon source
D-Galactose (C)
-0.7
-4.3
+0.6
N.D.
+0.6
carbon source
propionate (C)
-0.1
-5.1
+1.2
N.D.
+0.4
stress
Zinc chloride 0.0000015625 M
+0.3
-4.8
+1.6
N.D.
-0.3
carbon source
propionate (C)
+0.4
-5.0
+1.7
N.D.
+0.3
stress
Nickel (II) chloride 0.0025 M
+0.3
-3.8
+3.7
N.D.
-1.0
stress
Nickel (II) chloride 1.5 mM
-0.2
-0.5
+4.8
N.D.
-0.5
stress
Nickel (II) chloride 1.5 mM
-0.3
-0.6
+4.9
N.D.
-0.4
stress
RCH2 defined with Cobalt chloride 0.04 mM
-0.7
-2.0
+6.6
N.D.
+2.5
stress
RCH2 defined with Cobalt chloride 0.04 mM
-0.5
-2.0
+6.8
N.D.
+2.6
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