Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E2

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500 ntPf6N2E2_495 and Pf6N2E2_496 are separated by 183 nucleotidesPf6N2E2_496 and Pf6N2E2_497 are separated by 0 nucleotidesPf6N2E2_497 and Pf6N2E2_498 are separated by 183 nucleotidesPf6N2E2_498 and Pf6N2E2_499 are separated by 608 nucleotides Pf6N2E2_495 - YD repeat protein, at 561,448 to 562,563 _495 Pf6N2E2_496 - Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data), at 562,747 to 564,021 _496 Pf6N2E2_497 - Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism, at 564,022 to 565,389 _497 Pf6N2E2_498 - Dihydropyrimidinase (EC 3.5.2.2) (from data), at 565,573 to 567,012 _498 Pf6N2E2_499 - Possible pyrimidine permease in reductive pathway, at 567,621 to 569,099 _499
Group Condition Pf6N2E2_495 Pf6N2E2_496 Pf6N2E2_497 Pf6N2E2_498 Pf6N2E2_499
nitrogen source Uridine (N) -0.4 -4.4 -4.0 -3.0 -3.3
nitrogen source Uridine (N) +0.1 -3.8 -2.8 -3.0 -2.3
nitrogen source Cytosine (N) -0.3 -1.8 -2.0 -1.9 -1.4
nitrogen source Cytosine (N) -0.2 -1.5 -1.4 -1.5 -1.5
stress Bile salts 0.0125 M -3.3 -0.5 +0.7 -0.0 -0.3
nitrogen source Cytidine (N) -0.4 -0.7 -0.5 -0.7 -1.0
carbon source Ying_OrganicAcid7 rep B; time point 3 -0.3 -0.5 -1.3 -0.2 -0.5
carbon source Ying_Nucleobase14 rep A; time point 3 -0.3 +0.0 -0.9 -0.7 -0.5
nitrogen source Cytidine (N) +0.2 -0.8 -0.8 -0.4 -0.3
carbon source Ying_Nucleobase14 rep C; time point 3 -0.3 +0.0 -0.8 -0.6 -0.5
carbon source Ying_AminoAcid20 rep B; time point 3 +0.1 -0.3 -1.3 -0.2 -0.1
carbon source Ying_all64 rep A; time point 3 +0.1 -0.0 -1.3 +0.0 -0.4
carbon source Ying_Nucleobase14 rep B; time point 3 +0.2 +0.1 -0.8 -0.6 -0.3
vitamin With vitamins t2 -0.4 +0.1 -0.3 -0.5 -0.3
stress RCH2 defined with copper (II) chloride 0.03 mM -0.6 -0.1 -0.5 +0.1 -0.3
carbon source Ying_AminoAcid20 rep B; time point 2 +0.1 +0.1 -0.5 -0.0 -1.0
stress Cobalt chloride 0.6 mM +0.2 +0.1 -0.8 -0.8 +0.2
carbon source octanoate (C) -0.6 +0.3 +0.1 -0.1 -0.7
carbon source Ying_AminoAcid20 rep C; time point 2 -0.3 -0.0 +0.3 +0.0 -1.0
nitrogen source Glucuronamide (N) -0.3 +0.2 -0.8 -0.2 +0.2
carbon source a-Ketoglutaric (C) -0.8 -0.2 +0.1 -0.2 +0.3
nitrogen source Glucuronamide (N) -0.2 +0.6 -0.9 -0.1 -0.1
carbon source Ying_Nucleobase14 rep B; time point 2 +0.8 +0.0 -0.8 -0.1 -0.4
stress Zinc chloride 0.0000015625 M +0.6 -0.4 -0.9 +0.0 +0.3
carbon source Carbon source D-Glucose 10 mM -0.5 +0.3 +0.3 +0.2 -0.3
stress thiosulfate 0.25 M -0.5 +0.0 +0.3 -0.3 +0.6
nitrogen source nitrogen source nitrate 5mM -0.4 +0.0 +0.7 +0.3 -0.3
carbon source Carbon source D,L-Lactate 10 mM -0.3 +0.3 +0.3 +0.4 -0.2
stress Hydroxylamine 0.5 M +0.9 -0.1 -1.1 +0.2 +0.6
motility outer cut, LB soft agar motility assay +0.6 +0.4 +0.3 +0.3 +0.2
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